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@ -42,6 +42,8 @@
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||||
<h2 class="pkg-version" data-toc-text="25.3.1" id="redcapcast-2531">REDCapCAST 25.3.1<a class="anchor" aria-label="anchor" href="#redcapcast-2531"></a></h2>
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<ul><li><p>FIX: <code><a href="../reference/as_factor.html">as_factor()</a></code> now interprets empty variables with empty levels attribute as logicals to avoid returning factors with empty levels.</p></li>
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<li><p>NEW: <code><a href="../reference/as_logical.html">as_logical()</a></code>: interprets vectors with two levels as logical if values matches supplied list of logical pairs like “TRUE”/“FALSE”, “Yes”/“No” or 1/2. Eases interpretation of data from databases with minimal metadata. Works on vectors and for data.frames. Interprets vectors with single value also matching to any of supplied levels (Chooses first match pair if several matches).</p></li>
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<li><p>NEW: <code><a href="../reference/easy_redcap.html">easy_redcap()</a></code>: new parameter <code>data_format</code> to specify data format as c(“wide”, “list”, “redcap”, “long”). For now “redcap” and “long” is treated equally. This was added to ease MMRM analyses. In that case, missing baseline values can be carried forward as “last observation carried forward” using the <code><a href="https://tidyr.tidyverse.org/reference/fill.html" class="external-link">tidyr::fill()</a></code> function specifying variables to fill. Interesting discussion on filling data <a href="https://stackoverflow.com/a/13810615" class="external-link">here on Stackoverflow</a>. <code>redcap_read_tables()</code> now has the option “none” for the <code>split_forms</code> parameter to allow not splitting the data.</p></li>
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<li><p>FIX: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: The <code>convert_logicals</code> parameter has been turned off by default and logicals are now interpreted as field type “truefalse”. Converting logicals to factors would result in the numeric values being 1 for FALSE and 2 for TRUE, which is opposite of the traditional notation and could lead to serous problems if not handled correctly. This should solve it.</p></li>
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</ul></div>
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<div class="section level2">
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<h2 class="pkg-version" data-toc-text="25.1.1" id="redcapcast-2511">REDCapCAST 25.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2511"></a></h2><p class="text-muted">CRAN release: 2025-01-29</p>
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@ -5,7 +5,7 @@ articles:
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Database-creation: Database-creation.html
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REDCapCAST: REDCapCAST.html
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Shiny-app: Shiny-app.html
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last_built: 2025-03-04T13:17Z
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last_built: 2025-03-05T12:51Z
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urls:
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reference: https://agdamsbo.github.io/REDCapCAST/reference
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article: https://agdamsbo.github.io/REDCapCAST/articles
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@ -107,6 +107,12 @@ interpreted as TRUE.</p></dd>
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<span class="r-out co"><span class="r-pr">#></span> "logical" "logical" "numeric" "factor" </span>
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<span class="r-in"><span><span class="va">ds</span><span class="op">$</span><span class="va">A</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] "factor"</span>
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<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"TRUE"</span>,<span class="cn">NA</span><span class="op">)</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|></span></span></span>
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<span class="r-in"><span> <span class="fu">as_logical</span><span class="op">(</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] NA NA TRUE NA NA NA NA NA TRUE TRUE TRUE NA TRUE TRUE TRUE</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] TRUE NA TRUE TRUE TRUE</span>
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<span class="r-in"><span><span class="fu">as_logical</span><span class="op">(</span><span class="fl">0</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] FALSE</span>
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</code></pre></div>
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</div>
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -82,7 +82,7 @@
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<span class="r-in"><span><span class="st">"test"</span> <span class="op">|></span> <span class="fu">compact_vec</span><span class="op">(</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] "test"</span>
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<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">9</span><span class="op">]</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|></span> <span class="fu">compact_vec</span><span class="op">(</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] "b; e; g; a; d; g; g; h; b; h; i; c; i; f; i; e; c; b; g; d"</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] "i; e; c; b; g; d; d; b; i; b; c; c; a; g; e; d; a; c; g; a"</span>
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</code></pre></div>
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</div>
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -111,7 +111,7 @@ names(REDCapCAST::redcapcast_meta).</p></dd>
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<div class="section level2">
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">redcapcast_data</span><span class="op">$</span><span class="va">record_id</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/nrow.html" class="external-link">nrow</a></span><span class="op">(</span><span class="va">redcapcast_data</span><span class="op">)</span><span class="op">)</span></span></span>
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<span class="r-in"><span><span class="fu">ds2dd</span><span class="op">(</span><span class="va">redcapcast_data</span>, include.column.names<span class="op">=</span><span class="cn">TRUE</span><span class="op">)</span></span></span>
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<span class="r-in"><span><span class="fu">ds2dd</span><span class="op">(</span><span class="va">redcapcast_data</span>, include.column.names <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> $DataDictionary</span>
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<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type</span>
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<span class="r-out co"><span class="r-pr">#></span> 1 record_id basis NA text</span>
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@ -57,7 +57,7 @@
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<span> field.label.attr <span class="op">=</span> <span class="st">"label"</span>,</span>
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<span> field.validation <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span>,</span>
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<span> convert.logicals <span class="op">=</span> <span class="cn">TRUE</span></span>
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<span> convert.logicals <span class="op">=</span> <span class="cn">FALSE</span></span>
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<span><span class="op">)</span></span></code></pre></div>
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</div>
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@ -165,8 +165,8 @@ Please, do always inspect the data dictionary before upload.</p>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 15 more rows</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 16 more variables: cohabitation <chr>, hypertension <chr>, diabetes <chr>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># region <chr>, baseline_data_start_complete <chr>, mrs_assessed <chr>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># mrs_date <date>, mrs_score <dbl>, mrs_complete <chr>, con_mrs <dbl>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># con_calc <dbl>, consensus_complete <chr>, event_datetime <dttm>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># mrs_date <date>, mrs_score <dbl>, mrs_complete <chr>, con_mrs <lgl>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># con_calc <lgl>, consensus_complete <chr>, event_datetime <dttm>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># event_age <dbl>, event_type <chr>, new_event_complete <chr></span></span>
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<span class="r-out co"><span class="r-pr">#></span> </span>
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<span class="r-out co"><span class="r-pr">#></span> $meta</span>
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@ -184,7 +184,7 @@ Please, do always inspect the data dictionary before upload.</p>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> cohabitation data <span style="color: #BB0000;">NA</span> text cohabitation </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> hypertension data <span style="color: #BB0000;">NA</span> text hypertension </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 14 more rows</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>,</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
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||||
@ -242,21 +242,24 @@ Please, do always inspect the data dictionary before upload.</p>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
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<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id c <span style="color: #BB0000;">NA</span> text record_id </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id b <span style="color: #BB0000;">NA</span> text record_id </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepallength b <span style="color: #BB0000;">NA</span> text Sepal.Length</span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepalwidth b <span style="color: #BB0000;">NA</span> text Sepal.Width </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petallength b <span style="color: #BB0000;">NA</span> text Petal.Length</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petalwidth c <span style="color: #BB0000;">NA</span> text Petal.Width </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species b <span style="color: #BB0000;">NA</span> radio Species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepalwidth c <span style="color: #BB0000;">NA</span> text Sepal.Width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petallength c <span style="color: #BB0000;">NA</span> text Petal.Length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petalwidth b <span style="color: #BB0000;">NA</span> text Petal.Width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species c <span style="color: #BB0000;">NA</span> radio Species </span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu"><a href="numchar2fct.html">numchar2fct</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span>unknown <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="numchar2fct.html">numchar2fct</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 32 × 12</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 32 × 13</span></span>
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||||
<span class="r-out co"><span class="r-pr">#></span> record_id mpg cyl disp hp drat wt qsec vs am gear carb</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 1 21 2 160 110 3.9 2.62 16.5 1 2 2 4</span>
|
||||
@ -270,9 +273,10 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 9 22.8 1 141. 95 3.92 3.15 22.9 2 1 2 2</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 10 19.2 2 168. 123 3.92 3.44 18.3 2 1 2 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 22 more rows</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 1 more variable: unknown <lgl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 12 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 13 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
@ -287,6 +291,7 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> am data <span style="color: #BB0000;">NA</span> radio am </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> gear data <span style="color: #BB0000;">NA</span> radio gear </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> carb data <span style="color: #BB0000;">NA</span> radio carb </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">13</span> unknown data <span style="color: #BB0000;">NA</span> truefalse unknown </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
@ -324,12 +329,12 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id b <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepallength b <span style="color: #BB0000;">NA</span> text sepallength</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id a <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepallength a <span style="color: #BB0000;">NA</span> text sepallength</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepalwidth b <span style="color: #BB0000;">NA</span> text sepalwidth </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petallength a <span style="color: #BB0000;">NA</span> text petallength</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petalwidth b <span style="color: #BB0000;">NA</span> text petalwidth </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species b <span style="color: #BB0000;">NA</span> text species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petallength b <span style="color: #BB0000;">NA</span> text petallength</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petalwidth a <span style="color: #BB0000;">NA</span> text petalwidth </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species a <span style="color: #BB0000;">NA</span> text species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
|
||||
@ -45,7 +45,14 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">easy_redcap</span><span class="op">(</span><span class="va">project.name</span>, widen.data <span class="op">=</span> <span class="cn">TRUE</span>, <span class="va">uri</span>, raw_or_label <span class="op">=</span> <span class="st">"both"</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">easy_redcap</span><span class="op">(</span></span>
|
||||
<span> <span class="va">project.name</span>,</span>
|
||||
<span> <span class="va">uri</span>,</span>
|
||||
<span> raw_or_label <span class="op">=</span> <span class="st">"both"</span>,</span>
|
||||
<span> data_format <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"wide"</span>, <span class="st">"list"</span>, <span class="st">"redcap"</span>, <span class="st">"long"</span><span class="op">)</span>,</span>
|
||||
<span> widen.data <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> <span class="va">...</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -57,10 +64,6 @@
|
||||
<a href="https://keyring.r-lib.org/reference/key_get.html" class="external-link">key_set</a>, using the default keyring)</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-widen-data">widen.data<a class="anchor" aria-label="anchor" href="#arg-widen-data"></a></dt>
|
||||
<dd><p>argument to widen the exported data</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
|
||||
<dd><p>REDCap database API uri</p></dd>
|
||||
|
||||
@ -71,6 +74,15 @@
|
||||
data.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-data-format">data_format<a class="anchor" aria-label="anchor" href="#arg-data-format"></a></dt>
|
||||
<dd><p>Choose the data</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-widen-data">widen.data<a class="anchor" aria-label="anchor" href="#arg-widen-data"></a></dt>
|
||||
<dd><p>argument to widen the exported data. [DEPRECATED], use
|
||||
`data_format`instead</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>arguments passed on to <a href="read_redcap_tables.html">read_redcap_tables</a>.</p></dd>
|
||||
|
||||
|
||||
@ -70,8 +70,8 @@ coerce to a factor.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">format_redcap_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">3</span>,<span class="fl">20</span>,<span class="cn">TRUE</span><span class="op">)</span>,<span class="st">"1, First. | 2, second | 3, THIRD"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 3 1 1 3 3 1 2 3 3 3 2 2 1 3 2 2 1 2 1</span>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">format_redcap_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">3</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span>, <span class="st">"1, First. | 2, second | 3, THIRD"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 1 2 1 2 3 1 2 2 2 1 1 3 2 1 2 3 1 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> attr(,"labels")</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> First. second THIRD </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> "1" "2" "3" </span>
|
||||
|
||||
@ -71,7 +71,7 @@ Will preserve metadata in the data.frames as labels.</p>
|
||||
<span> events <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> forms <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> raw_or_label <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"raw"</span>, <span class="st">"label"</span>, <span class="st">"both"</span><span class="op">)</span>,</span>
|
||||
<span> split_forms <span class="op">=</span> <span class="st">"all"</span>,</span>
|
||||
<span> split_forms <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"all"</span>, <span class="st">"repeating"</span>, <span class="st">"none"</span><span class="op">)</span>,</span>
|
||||
<span> <span class="va">...</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
@ -117,7 +117,7 @@ Will preserve metadata in the data.frames as labels.</p>
|
||||
|
||||
<dt id="arg-split-forms">split_forms<a class="anchor" aria-label="anchor" href="#arg-split-forms"></a></dt>
|
||||
<dd><p>Whether to split "repeating" or "all" forms, default is
|
||||
all.</p></dd>
|
||||
all. Give "none" to export native semi-long REDCap format</p></dd>
|
||||
|
||||
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
|
||||
@ -73,16 +73,16 @@ factoring, but levels character vectors in order of appearance.</p>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fl">4</span><span class="op">)</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">var2fct</span><span class="op">(</span><span class="fl">6</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 2 3 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 1 9 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 2 3 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 1 7 10 </span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span>, <span class="fl">20</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">var2fct</span><span class="op">(</span><span class="fl">6</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Length Class Mode </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 character character </span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|></span> <span class="fu">var2fct</span><span class="op">(</span><span class="fl">6</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] b a a c a d c d c c d d c a d a a a b c</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: b a c d</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] c c d b c d b c b c b b b b b a c d b b</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Levels: c d b a</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
|
||||
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Block a user