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updated covr action

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Andreas Gammelgaard Damsbo 2025-02-25 10:45:51 +01:00
parent 7dfbb9b549
commit 319ccfd9dd
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2 changed files with 21 additions and 12 deletions
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30
.github/workflows/test-coverage.yaml vendored
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@ -4,9 +4,10 @@ on:
push: push:
branches: [main, master] branches: [main, master]
pull_request: pull_request:
branches: [main, master]
name: test-coverage name: test-coverage.yaml
permissions: read-all
jobs: jobs:
test-coverage: test-coverage:
@ -15,38 +16,47 @@ jobs:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps: steps:
- uses: actions/checkout@v3 - uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2 - uses: r-lib/actions/setup-r@v2
with: with:
use-public-rspm: true use-public-rspm: true
# - uses: r-lib/actions/setup-renv@v2
- uses: r-lib/actions/setup-r-dependencies@v2 - uses: r-lib/actions/setup-r-dependencies@v2
with: with:
extra-packages: any::covr extra-packages: any::covr, any::xml2
needs: coverage needs: coverage
- name: Test coverage - name: Test coverage
run: | run: |
covr::codecov( cov <- covr::package_coverage(
quiet = FALSE, quiet = FALSE,
clean = FALSE, clean = FALSE,
install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
) )
print(cov)
covr::to_cobertura(cov)
shell: Rscript {0} shell: Rscript {0}
- uses: codecov/codecov-action@v4
with:
# Fail if error if not on PR, or if on PR and token is given
fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}
- name: Show testthat output - name: Show testthat output
if: always() if: always()
run: | run: |
## -------------------------------------------------------------------- ## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash shell: bash
- name: Upload test results - name: Upload test results
if: failure() if: failure()
uses: actions/upload-artifact@v3 uses: actions/upload-artifact@v4
with: with:
name: coverage-test-failures name: coverage-test-failures
path: ${{ runner.temp }}/package path: ${{ runner.temp }}/package

3
README.md
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@ -1,7 +1,6 @@
<!-- badges: start --> <!-- badges: start -->
[![GitHub R package version](https://img.shields.io/github/r-package/v/agdamsbo/REDCapCAST)](https://github.com/agdamsbo/REDCapCAST) [![CRAN/METACRAN](https://img.shields.io/cran/v/REDCapCAST)](https://CRAN.R-project.org/package=REDCapCAST) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8013984.svg)](https://doi.org/10.5281/zenodo.8013984) [![R-hub](https://github.com/agdamsbo/REDCapCAST/actions/workflows/rhub.yaml/badge.svg)](https://github.com/agdamsbo/REDCapCAST/actions/workflows/rhub.yaml) [![R-CMD-check](https://github.com/agdamsbo/REDCapCAST/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/agdamsbo/REDCapCAST/actions/workflows/R-CMD-check.yaml) [![Page deployed](https://github.com/agdamsbo/REDCapCAST/actions/workflows/pages/pages-build-deployment/badge.svg)](https://github.com/agdamsbo/REDCapCAST/actions/workflows/pages/pages-build-deployment) [![Codecov test coverage](https://codecov.io/gh/agdamsbo/REDCapCAST/branch/master/graph/badge.svg)](https://app.codecov.io/gh/agdamsbo/REDCapCAST?branch=master) [![CRAN downloads](https://cranlogs.r-pkg.org/badges/grand-total/REDCapCAST)](https://cran.r-project.org/package=REDCapCAST) [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html) [![GitHub R package version](https://img.shields.io/github/r-package/v/agdamsbo/REDCapCAST)](https://github.com/agdamsbo/REDCapCAST) [![CRAN/METACRAN](https://img.shields.io/cran/v/REDCapCAST)](https://CRAN.R-project.org/package=REDCapCAST) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8013984.svg)](https://doi.org/10.5281/zenodo.8013984) [![R-hub](https://github.com/agdamsbo/REDCapCAST/actions/workflows/rhub.yaml/badge.svg)](https://github.com/agdamsbo/REDCapCAST/actions/workflows/rhub.yaml) [![R-CMD-check](https://github.com/agdamsbo/REDCapCAST/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/agdamsbo/REDCapCAST/actions/workflows/R-CMD-check.yaml) [![Page deployed](https://github.com/agdamsbo/REDCapCAST/actions/workflows/pages/pages-build-deployment/badge.svg)](https://github.com/agdamsbo/REDCapCAST/actions/workflows/pages/pages-build-deployment) [![CRAN downloads](https://cranlogs.r-pkg.org/badges/grand-total/REDCapCAST)](https://cran.r-project.org/package=REDCapCAST) [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html) [![Codecov test coverage](https://codecov.io/gh/agdamsbo/REDCapCAST/graph/badge.svg)](https://app.codecov.io/gh/agdamsbo/REDCapCAST)
<!-- badges: end --> <!-- badges: end -->
# REDCapCAST package <img src="man/figures/logo.png" align="right"/> # REDCapCAST package <img src="man/figures/logo.png" align="right"/>