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@ -40,32 +36,22 @@
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charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contributor Covenant Code of Conduct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Contributor Covenant Code of Conduct"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -18,29 +15,17 @@
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@ -49,7 +34,7 @@
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@ -120,7 +105,7 @@
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@ -129,7 +114,7 @@
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@ -18,29 +15,17 @@
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@ -49,7 +34,7 @@
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@ -249,7 +234,7 @@
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@ -258,7 +243,7 @@
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@ -5,7 +5,6 @@
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@ -83,7 +66,7 @@
<img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1> <img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
<div class="d-none name"><code>Database-creation.Rmd</code></div> <div class="d-none name"><code>Database-creation.Rmd</code></div>
</div> </div>
@ -557,6 +540,15 @@ datasets/spreadsheets securely in REDCap.</p>
#mwlefoodfi .gt_indent_5 { #mwlefoodfi .gt_indent_5 {
text-indent: 25px; text-indent: 25px;
} }
#mwlefoodfi .katex-display {
display: inline-flex !important;
margin-bottom: 0.75em !important;
}
#mwlefoodfi div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
height: 0px !important;
}
</style> </style>
<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false"> <table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead><tr class="gt_col_headings"> <thead><tr class="gt_col_headings">
@ -1285,6 +1277,15 @@ preserve as much information as possible.</p>
#eexombwkke .gt_indent_5 { #eexombwkke .gt_indent_5 {
text-indent: 25px; text-indent: 25px;
} }
#eexombwkke .katex-display {
display: inline-flex !important;
margin-bottom: 0.75em !important;
}
#eexombwkke div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
height: 0px !important;
}
</style> </style>
<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false"> <table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead><tr class="gt_col_headings"> <thead><tr class="gt_col_headings">
@ -1722,7 +1723,7 @@ upload: manual or through <code>REDCapR</code>.</p>
<span><span class="op">)</span></span></code></pre></div> <span><span class="op">)</span></span></code></pre></div>
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@ -1733,7 +1734,7 @@ upload: manual or through <code>REDCapR</code>.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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@ -5,7 +5,6 @@
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@ -15,25 +14,19 @@
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@ -42,32 +35,22 @@
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@ -83,7 +66,7 @@
<img src="../logo.png" class="logo" alt=""><h1>Introduction</h1> <img src="../logo.png" class="logo" alt=""><h1>Introduction</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
<div class="d-none name"><code>Introduction.Rmd</code></div> <div class="d-none name"><code>Introduction.Rmd</code></div>
</div> </div>
@ -539,6 +522,15 @@ demonstration of the functions.</p>
#mwlefoodfi .gt_indent_5 { #mwlefoodfi .gt_indent_5 {
text-indent: 25px; text-indent: 25px;
} }
#mwlefoodfi .katex-display {
display: inline-flex !important;
margin-bottom: 0.75em !important;
}
#mwlefoodfi div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
height: 0px !important;
}
</style> </style>
<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false"> <table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead><tr class="gt_col_headings"> <thead><tr class="gt_col_headings">
@ -1506,6 +1498,15 @@ demonstration of the functions.</p>
#eexombwkke .gt_indent_5 { #eexombwkke .gt_indent_5 {
text-indent: 25px; text-indent: 25px;
} }
#eexombwkke .katex-display {
display: inline-flex !important;
margin-bottom: 0.75em !important;
}
#eexombwkke div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
height: 0px !important;
}
</style> </style>
<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false"> <table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead><tr class="gt_col_headings"> <thead><tr class="gt_col_headings">
@ -1988,7 +1989,7 @@ approach.</p>
<span><span class="co">#&gt; $ new_event_complete_3_follow1: chr NA NA NA NA ...</span></span> <span><span class="co">#&gt; $ new_event_complete_3_follow1: chr NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_3_follow2: chr NA NA "Incomplete" "Complete" ...</span></span></code></pre></div> <span><span class="co">#&gt; $ new_event_complete_3_follow2: chr NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
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@ -1999,7 +2000,7 @@ approach.</p>
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@ -5,7 +5,6 @@
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@ -15,25 +14,19 @@
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@ -83,7 +66,7 @@
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@ -109,7 +92,7 @@ functionality, but might be extended in the future.</p>
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@ -70,7 +55,7 @@
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@ -51,7 +36,7 @@
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</div> </div>
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<h2>Authors</h2> <h2>Authors</h2>
<ul class="list-unstyled"><li> <ul class="list-unstyled"><li>
@ -64,23 +49,24 @@
</li> </li>
</ul></div> </ul></div>
<div class="section level2 citation"> <div class="section level2">
<h2 id="citation">Citation</h2> <h2 id="citation">Citation</h2>
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p> <p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
<p>Damsbo A, Egeler P (2024). <p>Damsbo A, Egeler P (2024).
<em>REDCapCAST: REDCap Castellated Data Handling</em>. <em>REDCapCAST: REDCap Castellated Data Handling</em>.
R package version 24.6.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>. R package version 24.9.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
</p> </p>
<pre>@Manual{, <pre>@Manual{,
title = {REDCapCAST: REDCap Castellated Data Handling}, title = {REDCapCAST: REDCap Castellated Data Handling},
author = {Andreas Gammelgaard Damsbo and Paul Egeler}, author = {Andreas Gammelgaard Damsbo and Paul Egeler},
year = {2024}, year = {2024},
note = {R package version 24.6.1, https://agdamsbo.github.io/REDCapCAST/}, note = {R package version 24.9.1, https://agdamsbo.github.io/REDCapCAST/},
url = {https://github.com/agdamsbo/REDCapCAST}, url = {https://github.com/agdamsbo/REDCapCAST},
}</pre> }</pre>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -49,9 +34,13 @@
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<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small> <small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
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<div class="section level2">
<h2 class="pkg-version" data-toc-text="24.9.1" id="redcapcast-2491">REDCapCAST 24.9.1<a class="anchor" aria-label="anchor" href="#redcapcast-2491"></a></h2>
<p>Minor changes to pass tests and renv is out.</p>
</div>
<div class="section level2"> <div class="section level2">
<h2 class="pkg-version" data-toc-text="24.6.1" id="redcapcast-2461">REDCapCAST 24.6.1<a class="anchor" aria-label="anchor" href="#redcapcast-2461"></a></h2><p class="text-muted">CRAN release: 2024-06-07</p> <h2 class="pkg-version" data-toc-text="24.6.1" id="redcapcast-2461">REDCapCAST 24.6.1<a class="anchor" aria-label="anchor" href="#redcapcast-2461"></a></h2><p class="text-muted">CRAN release: 2024-06-07</p>
<div class="section level4"> <div class="section level4">
@ -154,7 +143,7 @@
<ul><li>metadata handling <strong>IMPROVED</strong>: improved handling of different column names in matadata (DataDictionary) from REDCap dependent on whether it is acquired thorugh the api og downloaded from the server.</li> <ul><li>metadata handling <strong>IMPROVED</strong>: improved handling of different column names in matadata (DataDictionary) from REDCap dependent on whether it is acquired thorugh the api og downloaded from the server.</li>
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pandoc: 3.1.11 pandoc: 3.1.11
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Database-creation: Database-creation.html Database-creation: Database-creation.html
Introduction: Introduction.html Introduction: Introduction.html
Shiny-app: Shiny-app.html Shiny-app: Shiny-app.html
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urls: urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference reference: https://agdamsbo.github.io/REDCapCAST/reference
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@ -1,20 +1,17 @@
<!DOCTYPE html> <!DOCTYPE html>
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and child tables for each repeating instrument. Metadata and child tables for each repeating instrument. Metadata
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@ -22,29 +19,17 @@ is used to determine which fields should be included in each resultant table."><
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@ -53,7 +38,7 @@ is used to determine which fields should be included in each resultant table."><
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<img src="../logo.png" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1> <img src="../logo.png" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
<div class="d-none name"><code>REDCap_split.Rd</code></div> <div class="d-none name"><code>REDCap_split.Rd</code></div>
</div> </div>
@ -75,37 +60,35 @@ is used to determine which fields should be included in each resultant table.</p
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>records</dt>
<dl><dt id="arg-records">records<a class="anchor" aria-label="anchor" href="#arg-records"></a></dt>
<dd><p>Exported project records. May be a <code>data.frame</code>, <dd><p>Exported project records. May be a <code>data.frame</code>,
<code>response</code>, or <code>character</code> vector containing JSON from an API <code>response</code>, or <code>character</code> vector containing JSON from an API
call.</p></dd> call.</p></dd>
<dt>metadata</dt> <dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
<dd><p>Project metadata (the data dictionary). May be a <dd><p>Project metadata (the data dictionary). May be a
<code>data.frame</code>, <code>response</code>, or <code>character</code> vector containing <code>data.frame</code>, <code>response</code>, or <code>character</code> vector containing
JSON from an API call.</p></dd> JSON from an API call.</p></dd>
<dt>primary_table_name</dt> <dt id="arg-primary-table-name">primary_table_name<a class="anchor" aria-label="anchor" href="#arg-primary-table-name"></a></dt>
<dd><p>Name given to the list element for the primary <dd><p>Name given to the list element for the primary
output table (as described in <em>README.md</em>). Ignored if output table (as described in <em>README.md</em>). Ignored if
<code>forms = 'all'</code>.</p></dd> <code>forms = 'all'</code>.</p></dd>
<dt>forms</dt> <dt id="arg-forms">forms<a class="anchor" aria-label="anchor" href="#arg-forms"></a></dt>
<dd><p>Indicate whether to create separate tables for repeating <dd><p>Indicate whether to create separate tables for repeating
instruments only or for all forms.</p></dd> instruments only or for all forms.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>A list of <code>"data.frame"</code>s. The number of tables will differ
depending on the <code>forms</code> option selected.</p><ul><li><p><code>'repeating'</code>: one base table and one or more
<p>A list of <code>"data.frame"</code>s. The number of tables will differ
depending on the <code>forms</code> option selected.</p>
<p></p>
<ul><li><p><code>'repeating'</code>: one base table and one or more
tables for each repeating instrument.</p></li> tables for each repeating instrument.</p></li>
<li><p><code>'all'</code>: a data.frame for each instrument, regardless of <li><p><code>'all'</code>: a data.frame for each instrument, regardless of
whether it is a repeating instrument or not.</p></li> whether it is a repeating instrument or not.</p></li>
@ -117,7 +100,7 @@ instruments only or for all forms.</p></dd>
<div class="section level2"> <div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2> <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span> <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
<span class="r-in"><span><span class="co"># Using an API call -------------------------------------------------------</span></span></span> <span class="r-in"><span><span class="co"># Using an API call -------------------------------------------------------</span></span></span>
<span class="r-in"><span></span></span> <span class="r-in"><span></span></span>
<span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va">RCurl</span><span class="op">)</span></span></span> <span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va">RCurl</span><span class="op">)</span></span></span>
@ -172,10 +155,10 @@ instruments only or for all forms.</p></dd>
<span class="r-in"><span><span class="co"># Split the tables</span></span></span> <span class="r-in"><span><span class="co"># Split the tables</span></span></span>
<span class="r-in"><span><span class="fu">REDCapRITS</span><span class="fu">::</span><span class="fu">REDCap_split</span><span class="op">(</span><span class="va">data</span>, <span class="va">metadata</span><span class="op">)</span></span></span> <span class="r-in"><span><span class="fu">REDCapRITS</span><span class="fu">::</span><span class="fu">REDCap_split</span><span class="op">(</span><span class="va">data</span>, <span class="va">metadata</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/getwd.html" class="external-link">setwd</a></span><span class="op">(</span><span class="va">old</span><span class="op">)</span></span></span> <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/getwd.html" class="external-link">setwd</a></span><span class="op">(</span><span class="va">old</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span> <span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
</code></pre></div> </code></pre></div>
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@ -184,7 +167,7 @@ instruments only or for all forms.</p></dd>
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View File

@ -1,24 +1,21 @@
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Mimics case_when for list of regex patterns and values. Used for date/time <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>List-base regex case_when — case_match_regex_list • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="List-base regex case_when — case_match_regex_list"><meta name="description" content="Mimics case_when for list of regex patterns and values. Used for date/time
validation generation from name vector. Like case_when, the matches are in validation generation from name vector. Like case_when, the matches are in
order of priority. order of priority.
Primarily used in REDCapCAST to do data type coding from systematic variable Primarily used in REDCapCAST to do data type coding from systematic variable
naming."><title>List-base regex case_when — case_match_regex_list • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="List-base regex case_when — case_match_regex_list"><meta property="og:description" content="Mimics case_when for list of regex patterns and values. Used for date/time naming."><meta property="og:description" content="Mimics case_when for list of regex patterns and values. Used for date/time
validation generation from name vector. Like case_when, the matches are in validation generation from name vector. Like case_when, the matches are in
order of priority. order of priority.
Primarily used in REDCapCAST to do data type coding from systematic variable Primarily used in REDCapCAST to do data type coding from systematic variable
naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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@ -26,29 +23,17 @@ naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAS
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<img src="../logo.png" class="logo" alt=""><h1>List-base regex case_when</h1> <img src="../logo.png" class="logo" alt=""><h1>List-base regex case_when</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>case_match_regex_list.Rd</code></div> <div class="d-none name"><code>case_match_regex_list.Rd</code></div>
</div> </div>
@ -76,23 +61,23 @@ naming.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>vector</p></dd> <dd><p>vector</p></dd>
<dt>match.list</dt> <dt id="arg-match-list">match.list<a class="anchor" aria-label="anchor" href="#arg-match-list"></a></dt>
<dd><p>list of case matches</p></dd> <dd><p>list of case matches</p></dd>
<dt>.default</dt> <dt id="arg--default">.default<a class="anchor" aria-label="anchor" href="#arg--default"></a></dt>
<dd><p>Default value for non-matches. Default is NA.</p></dd> <dd><p>Default value for non-matches. Default is NA.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
<p>vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -104,7 +89,7 @@ naming.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "date_dmy" "time_hh_mm_ss" NA "time_hh_mm_ss"</span> <span class="r-out co"><span class="r-pr">#&gt;</span> [1] "date_dmy" "time_hh_mm_ss" NA "time_hh_mm_ss"</span>
</code></pre></div> </code></pre></div>
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@ -113,7 +98,7 @@ naming.</p>
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1> <img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2choice.Rd</code></div> <div class="d-none name"><code>char2choice.Rd</code></div>
</div> </div>
@ -64,27 +49,27 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>vector</p></dd> <dd><p>vector</p></dd>
<dt>char.split</dt> <dt id="arg-char-split">char.split<a class="anchor" aria-label="anchor" href="#arg-char-split"></a></dt>
<dd><p>splitting character(s)</p></dd> <dd><p>splitting character(s)</p></dd>
<dt>raw</dt> <dt id="arg-raw">raw<a class="anchor" aria-label="anchor" href="#arg-raw"></a></dt>
<dd><p>specific values. Can be used for options of same length.</p></dd> <dd><p>specific values. Can be used for options of same length.</p></dd>
<dt>.default</dt> <dt id="arg--default">.default<a class="anchor" aria-label="anchor" href="#arg--default"></a></dt>
<dd><p>default value for missing. Default is NA.</p></dd> <dd><p>default value for missing. Default is NA.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
<p>vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -94,7 +79,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] NA "1, what" </span> <span class="r-out co"><span class="r-pr">#&gt;</span> [4] NA "1, what" </span>
</code></pre></div> </code></pre></div>
</div> </div>
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@ -103,7 +88,7 @@
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@ -49,7 +34,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1> <img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2cond.Rd</code></div> <div class="d-none name"><code>char2cond.Rd</code></div>
</div> </div>
@ -70,31 +55,31 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>vector</p></dd> <dd><p>vector</p></dd>
<dt>minor.split</dt> <dt id="arg-minor-split">minor.split<a class="anchor" aria-label="anchor" href="#arg-minor-split"></a></dt>
<dd><p>minor split</p></dd> <dd><p>minor split</p></dd>
<dt>major.split</dt> <dt id="arg-major-split">major.split<a class="anchor" aria-label="anchor" href="#arg-major-split"></a></dt>
<dd><p>major split</p></dd> <dd><p>major split</p></dd>
<dt>major.sep</dt> <dt id="arg-major-sep">major.sep<a class="anchor" aria-label="anchor" href="#arg-major-sep"></a></dt>
<dd><p>argument separation. Default is " or ".</p></dd> <dd><p>argument separation. Default is " or ".</p></dd>
<dt>.default</dt> <dt id="arg--default">.default<a class="anchor" aria-label="anchor" href="#arg--default"></a></dt>
<dd><p>default value for missing. Default is NA.</p></dd> <dd><p>default value for missing. Default is NA.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
<p>vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -104,7 +89,7 @@
<span class="r-in"></span> <span class="r-in"></span>
</code></pre></div> </code></pre></div>
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@ -113,7 +98,7 @@
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<!DOCTYPE html> <!DOCTYPE html>
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substitutes spaces for underscores and converts to lower case. substitutes spaces for underscores and converts to lower case.
Trying to make up for different naming conventions."><title>clean_redcap_name — clean_redcap_name • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="clean_redcap_name — clean_redcap_name"><meta property="og:description" content="Stepwise removal on non-alphanumeric characters, trailing white space, Trying to make up for different naming conventions."><meta property="og:description" content="Stepwise removal on non-alphanumeric characters, trailing white space,
substitutes spaces for underscores and converts to lower case. substitutes spaces for underscores and converts to lower case.
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -22,29 +19,17 @@ Trying to make up for different naming conventions."><meta property="og:image" c
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@ -53,7 +38,7 @@ Trying to make up for different naming conventions."><meta property="og:image" c
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>clean_redcap_name</h1> <img src="../logo.png" class="logo" alt=""><h1>clean_redcap_name</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>clean_redcap_name.Rd</code></div> <div class="d-none name"><code>clean_redcap_name.Rd</code></div>
</div> </div>
@ -70,18 +55,18 @@ Trying to make up for different naming conventions.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>vector or data frame for cleaning</p></dd> <dd><p>vector or data frame for cleaning</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector or data frame, same format as input</p>
<p>vector or data frame, same format as input</p>
</div> </div>
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reference/create_html_table.html
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@ -1,16 +1,13 @@
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@ -49,7 +34,7 @@
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1> <img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>create_html_table.Rd</code></div> <div class="d-none name"><code>create_html_table.Rd</code></div>
</div> </div>
@ -64,19 +49,19 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>text</dt>
<dl><dt id="arg-text">text<a class="anchor" aria-label="anchor" href="#arg-text"></a></dt>
<dd><p>descriptive text</p></dd> <dd><p>descriptive text</p></dd>
<dt>variable</dt> <dt id="arg-variable">variable<a class="anchor" aria-label="anchor" href="#arg-variable"></a></dt>
<dd><p>variable to pipe</p></dd> <dd><p>variable to pipe</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -88,7 +73,7 @@
<span class="r-in"><span><span class="co"># create_html_table(text = c("CPR nummer","Word"), variable = c("[cpr][1]", "[cpr][2]", "[test]"))</span></span></span> <span class="r-in"><span><span class="co"># create_html_table(text = c("CPR nummer","Word"), variable = c("[cpr][1]", "[cpr][2]", "[test]"))</span></span></span>
</code></pre></div> </code></pre></div>
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@ -97,7 +82,7 @@
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initial design phase. If you want to later add new instruments, this can be initial design phase. If you want to later add new instruments, this can be
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -22,29 +19,17 @@ used to add instrument(s) to a project in production."><meta property="og:image"
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@ -53,7 +38,7 @@ used to add instrument(s) to a project in production."><meta property="og:image"
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Create zips file with necessary content based on data set</h1> <img src="../logo.png" class="logo" alt=""><h1>Create zips file with necessary content based on data set</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/create_instrument_meta.R" class="external-link"><code>R/create_instrument_meta.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/create_instrument_meta.R" class="external-link"><code>R/create_instrument_meta.R</code></a></small>
<div class="d-none name"><code>create_instrument_meta.Rd</code></div> <div class="d-none name"><code>create_instrument_meta.Rd</code></div>
</div> </div>
@ -70,16 +55,18 @@ used to add instrument(s) to a project in production.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>metadata for the relevant instrument. <dd><p>metadata for the relevant instrument.
Could be from `ds2dd_detailed()`</p></dd> Could be from `ds2dd_detailed()`</p></dd>
<dt>dir</dt> <dt id="arg-dir">dir<a class="anchor" aria-label="anchor" href="#arg-dir"></a></dt>
<dd><p>destination dir for the instrument zip. Default is the current WD.</p></dd> <dd><p>destination dir for the instrument zip. Default is the current WD.</p></dd>
<dt>record.id</dt> <dt id="arg-record-id">record.id<a class="anchor" aria-label="anchor" href="#arg-record-id"></a></dt>
<dd><p>flag to omit the first row of the data dictionary assuming <dd><p>flag to omit the first row of the data dictionary assuming
this is the record_id field which should not be included in the instrument. this is the record_id field which should not be included in the instrument.
Default is TRUE.</p></dd> Default is TRUE.</p></dd>
@ -87,9 +74,7 @@ Default is TRUE.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list</p>
<p>list</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -112,7 +97,7 @@ Default is TRUE.</p></dd>
<span class="r-in"><span><span class="co"># create_instrument_meta(record.id = FALSE)</span></span></span> <span class="r-in"><span><span class="co"># create_instrument_meta(record.id = FALSE)</span></span></span>
</code></pre></div> </code></pre></div>
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@ -121,7 +106,7 @@ Default is TRUE.</p></dd>
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<img src="../logo.png" class="logo" alt=""><h1>Convert single digits to words</h1> <img src="../logo.png" class="logo" alt=""><h1>Convert single digits to words</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>d2w.Rd</code></div> <div class="d-none name"><code>d2w.Rd</code></div>
</div> </div>
@ -64,27 +49,27 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>data. Handle vectors, data.frames and lists</p></dd> <dd><p>data. Handle vectors, data.frames and lists</p></dd>
<dt>lang</dt> <dt id="arg-lang">lang<a class="anchor" aria-label="anchor" href="#arg-lang"></a></dt>
<dd><p>language. Danish (da) and English (en), Default is "en"</p></dd> <dd><p>language. Danish (da) and English (en), Default is "en"</p></dd>
<dt>neutrum</dt> <dt id="arg-neutrum">neutrum<a class="anchor" aria-label="anchor" href="#arg-neutrum"></a></dt>
<dd><p>for numbers depending on counted word</p></dd> <dd><p>for numbers depending on counted word</p></dd>
<dt>everything</dt> <dt id="arg-everything">everything<a class="anchor" aria-label="anchor" href="#arg-everything"></a></dt>
<dd><p>flag to also split numbers &gt;9 to single digits</p></dd> <dd><p>flag to also split numbers &gt;9 to single digits</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>returns characters in same format as input</p>
<p>returns characters in same format as input</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -115,7 +100,7 @@
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</code></pre></div> </code></pre></div>
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@ -59,7 +44,7 @@ data dictionary, but gives a few options for formatting."><meta property="og:ima
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1> <img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>doc2dd.Rd</code></div> <div class="d-none name"><code>doc2dd.Rd</code></div>
</div> </div>
@ -94,75 +79,75 @@ data dictionary, but gives a few options for formatting.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>tibble or data.frame with all variable names in one column</p></dd> <dd><p>tibble or data.frame with all variable names in one column</p></dd>
<dt>instrument.name</dt> <dt id="arg-instrument-name">instrument.name<a class="anchor" aria-label="anchor" href="#arg-instrument-name"></a></dt>
<dd><p>character vector length one. Instrument name.</p></dd> <dd><p>character vector length one. Instrument name.</p></dd>
<dt>col.variables</dt> <dt id="arg-col-variables">col.variables<a class="anchor" aria-label="anchor" href="#arg-col-variables"></a></dt>
<dd><p>variable names column (default = 1), allows dplyr <dd><p>variable names column (default = 1), allows dplyr
subsetting</p></dd> subsetting</p></dd>
<dt>list.datetime.format</dt> <dt id="arg-list-datetime-format">list.datetime.format<a class="anchor" aria-label="anchor" href="#arg-list-datetime-format"></a></dt>
<dd><p>formatting for date/time detection. <dd><p>formatting for date/time detection.
See `case_match_regex_list()`</p></dd> See `case_match_regex_list()`</p></dd>
<dt>col.description</dt> <dt id="arg-col-description">col.description<a class="anchor" aria-label="anchor" href="#arg-col-description"></a></dt>
<dd><p>descriptions column, allows dplyr <dd><p>descriptions column, allows dplyr
subsetting. If empty, variable names will be used.</p></dd> subsetting. If empty, variable names will be used.</p></dd>
<dt>col.condition</dt> <dt id="arg-col-condition">col.condition<a class="anchor" aria-label="anchor" href="#arg-col-condition"></a></dt>
<dd><p>conditions for branching column, allows dplyr <dd><p>conditions for branching column, allows dplyr
subsetting. See `char2cond()`.</p></dd> subsetting. See `char2cond()`.</p></dd>
<dt>col.subheader</dt> <dt id="arg-col-subheader">col.subheader<a class="anchor" aria-label="anchor" href="#arg-col-subheader"></a></dt>
<dd><p>sub-header column, allows dplyr subsetting. <dd><p>sub-header column, allows dplyr subsetting.
See `format_subheader()`.</p></dd> See `format_subheader()`.</p></dd>
<dt>subheader.tag</dt> <dt id="arg-subheader-tag">subheader.tag<a class="anchor" aria-label="anchor" href="#arg-subheader-tag"></a></dt>
<dd><p>formatting tag. Default is "h2"</p></dd> <dd><p>formatting tag. Default is "h2"</p></dd>
<dt>condition.minor.sep</dt> <dt id="arg-condition-minor-sep">condition.minor.sep<a class="anchor" aria-label="anchor" href="#arg-condition-minor-sep"></a></dt>
<dd><p>condition split minor. See `char2cond()`. <dd><p>condition split minor. See `char2cond()`.
Default is ",".</p></dd> Default is ",".</p></dd>
<dt>condition.major.sep</dt> <dt id="arg-condition-major-sep">condition.major.sep<a class="anchor" aria-label="anchor" href="#arg-condition-major-sep"></a></dt>
<dd><p>condition split major. See `char2cond()`. <dd><p>condition split major. See `char2cond()`.
Default is ";".</p></dd> Default is ";".</p></dd>
<dt>col.calculation</dt> <dt id="arg-col-calculation">col.calculation<a class="anchor" aria-label="anchor" href="#arg-col-calculation"></a></dt>
<dd><p>calculations column. Has to be written exact. <dd><p>calculations column. Has to be written exact.
Character vector.</p></dd> Character vector.</p></dd>
<dt>col.choices</dt> <dt id="arg-col-choices">col.choices<a class="anchor" aria-label="anchor" href="#arg-col-choices"></a></dt>
<dd><p>choices column. See `char2choice()`.</p></dd> <dd><p>choices column. See `char2choice()`.</p></dd>
<dt>choices.char.sep</dt> <dt id="arg-choices-char-sep">choices.char.sep<a class="anchor" aria-label="anchor" href="#arg-choices-char-sep"></a></dt>
<dd><p>choices split. See `char2choice()`. Default is "/".</p></dd> <dd><p>choices split. See `char2choice()`. Default is "/".</p></dd>
<dt>missing.default</dt> <dt id="arg-missing-default">missing.default<a class="anchor" aria-label="anchor" href="#arg-missing-default"></a></dt>
<dd><p>value for missing fields. Default is NA.</p></dd> <dd><p>value for missing fields. Default is NA.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>tibble or data.frame (same as data)</p>
<p>tibble or data.frame (same as data)</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -177,7 +162,7 @@ Character vector.</p></dd>
<span class="r-in"></span> <span class="r-in"></span>
</code></pre></div> </code></pre></div>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
</nav></aside></div> </nav></aside></div>
@ -186,7 +171,7 @@ Character vector.</p></dd>
</div> </div>
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@ -1,18 +1,15 @@
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -20,29 +17,17 @@ for a more advanced function."><meta property="og:image" content="https://agdams
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@ -51,7 +36,7 @@ for a more advanced function."><meta property="og:image" content="https://agdams
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<img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1> <img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
<div class="d-none name"><code>ds2dd.Rd</code></div> <div class="d-none name"><code>ds2dd.Rd</code></div>
</div> </div>
@ -75,46 +60,46 @@ for a more advanced function.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>ds</dt>
<dl><dt id="arg-ds">ds<a class="anchor" aria-label="anchor" href="#arg-ds"></a></dt>
<dd><p>data set</p></dd> <dd><p>data set</p></dd>
<dt>record.id</dt> <dt id="arg-record-id">record.id<a class="anchor" aria-label="anchor" href="#arg-record-id"></a></dt>
<dd><p>name or column number of id variable, moved to first row of <dd><p>name or column number of id variable, moved to first row of
data dictionary, character of integer. Default is "record_id".</p></dd> data dictionary, character of integer. Default is "record_id".</p></dd>
<dt>form.name</dt> <dt id="arg-form-name">form.name<a class="anchor" aria-label="anchor" href="#arg-form-name"></a></dt>
<dd><p>vector of form names, character string, length 1 or length <dd><p>vector of form names, character string, length 1 or length
equal to number of variables. Default is "basis".</p></dd> equal to number of variables. Default is "basis".</p></dd>
<dt>field.type</dt> <dt id="arg-field-type">field.type<a class="anchor" aria-label="anchor" href="#arg-field-type"></a></dt>
<dd><p>vector of field types, character string, length 1 or length <dd><p>vector of field types, character string, length 1 or length
equal to number of variables. Default is "text.</p></dd> equal to number of variables. Default is "text.</p></dd>
<dt>field.label</dt> <dt id="arg-field-label">field.label<a class="anchor" aria-label="anchor" href="#arg-field-label"></a></dt>
<dd><p>vector of form names, character string, length 1 or length <dd><p>vector of form names, character string, length 1 or length
equal to number of variables. Default is NULL and is then identical to field equal to number of variables. Default is NULL and is then identical to field
names.</p></dd> names.</p></dd>
<dt>include.column.names</dt> <dt id="arg-include-column-names">include.column.names<a class="anchor" aria-label="anchor" href="#arg-include-column-names"></a></dt>
<dd><p>Flag to give detailed output including new <dd><p>Flag to give detailed output including new
column names for original data set for upload.</p></dd> column names for original data set for upload.</p></dd>
<dt>metadata</dt> <dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
<dd><p>Metadata column names. Default is the included <dd><p>Metadata column names. Default is the included
REDCapCAST::metadata_names.</p></dd> REDCapCAST::metadata_names.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame or list of data.frame and vector</p>
<p>data.frame or list of data.frame and vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2> <h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
@ -294,7 +279,7 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div> </code></pre></div>
</div> </div>
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@ -303,7 +288,7 @@ REDCapCAST::metadata_names.</p></dd>
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1> <img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>ds2dd_detailed.Rd</code></div> <div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
</div> </div>
@ -79,84 +64,84 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data frame</p></dd> <dd><p>data frame</p></dd>
<dt>add.auto.id</dt> <dt id="arg-add-auto-id">add.auto.id<a class="anchor" aria-label="anchor" href="#arg-add-auto-id"></a></dt>
<dd><p>flag to add id column</p></dd> <dd><p>flag to add id column</p></dd>
<dt>date.format</dt> <dt id="arg-date-format">date.format<a class="anchor" aria-label="anchor" href="#arg-date-format"></a></dt>
<dd><p>date format, character string. ymd/dmy/mdy. dafault is <dd><p>date format, character string. ymd/dmy/mdy. dafault is
dmy.</p></dd> dmy.</p></dd>
<dt>form.name</dt> <dt id="arg-form-name">form.name<a class="anchor" aria-label="anchor" href="#arg-form-name"></a></dt>
<dd><p>manually specify form name(s). Vector of length 1 or <dd><p>manually specify form name(s). Vector of length 1 or
ncol(data). Default is NULL and "data" is used.</p></dd> ncol(data). Default is NULL and "data" is used.</p></dd>
<dt>form.sep</dt> <dt id="arg-form-sep">form.sep<a class="anchor" aria-label="anchor" href="#arg-form-sep"></a></dt>
<dd><p>If supplied dataset has form names as suffix or prefix to the <dd><p>If supplied dataset has form names as suffix or prefix to the
column/variable names, the seperator can be specified. If supplied, the column/variable names, the seperator can be specified. If supplied, the
form.sep is ignored. Default is NULL.</p></dd> form.sep is ignored. Default is NULL.</p></dd>
<dt>form.prefix</dt> <dt id="arg-form-prefix">form.prefix<a class="anchor" aria-label="anchor" href="#arg-form-prefix"></a></dt>
<dd><p>Flag to set if form is prefix (TRUE) or suffix (FALSE) to <dd><p>Flag to set if form is prefix (TRUE) or suffix (FALSE) to
the column names. Assumes all columns have pre- or suffix if specified.</p></dd> the column names. Assumes all columns have pre- or suffix if specified.</p></dd>
<dt>field.type</dt> <dt id="arg-field-type">field.type<a class="anchor" aria-label="anchor" href="#arg-field-type"></a></dt>
<dd><p>manually specify field type(s). Vector of length 1 or <dd><p>manually specify field type(s). Vector of length 1 or
ncol(data). Default is NULL and "text" is used for everything but factors, ncol(data). Default is NULL and "text" is used for everything but factors,
which wil get "radio".</p></dd> which wil get "radio".</p></dd>
<dt>field.label</dt> <dt id="arg-field-label">field.label<a class="anchor" aria-label="anchor" href="#arg-field-label"></a></dt>
<dd><p>manually specify field label(s). Vector of length 1 or <dd><p>manually specify field label(s). Vector of length 1 or
ncol(data). Default is NULL and colnames(data) is used or attribute ncol(data). Default is NULL and colnames(data) is used or attribute
`field.label.attr` for haven_labelled data set (imported .dta file with `field.label.attr` for haven_labelled data set (imported .dta file with
`haven::read_dta()`).</p></dd> `haven::read_dta()`).</p></dd>
<dt>field.label.attr</dt> <dt id="arg-field-label-attr">field.label.attr<a class="anchor" aria-label="anchor" href="#arg-field-label-attr"></a></dt>
<dd><p>attribute name for named labels for haven_labelled <dd><p>attribute name for named labels for haven_labelled
data set (imported .dta file with `haven::read_dta()`. Default is "label"</p></dd> data set (imported .dta file with `haven::read_dta()`. Default is "label"</p></dd>
<dt>field.validation</dt> <dt id="arg-field-validation">field.validation<a class="anchor" aria-label="anchor" href="#arg-field-validation"></a></dt>
<dd><p>manually specify field validation(s). Vector of <dd><p>manually specify field validation(s). Vector of
length 1 or ncol(data). Default is NULL and `levels()` are used for factors length 1 or ncol(data). Default is NULL and `levels()` are used for factors
or attribute `factor.labels.attr` for haven_labelled data set (imported .dta or attribute `factor.labels.attr` for haven_labelled data set (imported .dta
file with `haven::read_dta()`).</p></dd> file with `haven::read_dta()`).</p></dd>
<dt>metadata</dt> <dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
<dd><p>redcap metadata headings. Default is <dd><p>redcap metadata headings. Default is
REDCapCAST:::metadata_names.</p></dd> REDCapCAST:::metadata_names.</p></dd>
<dt>validate.time</dt> <dt id="arg-validate-time">validate.time<a class="anchor" aria-label="anchor" href="#arg-validate-time"></a></dt>
<dd><p>Flag to validate guessed time columns</p></dd> <dd><p>Flag to validate guessed time columns</p></dd>
<dt>time.var.sel.pos</dt> <dt id="arg-time-var-sel-pos">time.var.sel.pos<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-pos"></a></dt>
<dd><p>Positive selection regex string passed to <dd><p>Positive selection regex string passed to
`gues_time_only_filter()` as sel.pos.</p></dd> `gues_time_only_filter()` as sel.pos.</p></dd>
<dt>time.var.sel.neg</dt> <dt id="arg-time-var-sel-neg">time.var.sel.neg<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-neg"></a></dt>
<dd><p>Negative selection regex string passed to <dd><p>Negative selection regex string passed to
`gues_time_only_filter()` as sel.neg.</p></dd> `gues_time_only_filter()` as sel.neg.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list of length 2</p>
<p>list of length 2</p>
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2> <h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
@ -414,7 +399,7 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div> </code></pre></div>
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@ -423,7 +408,7 @@ Please, do always inspect the data dictionary before upload.</p>
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<img src="../logo.png" class="logo" alt=""><h1>Secure API key storage and data acquisition in one</h1> <img src="../logo.png" class="logo" alt=""><h1>Secure API key storage and data acquisition in one</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
<div class="d-none name"><code>easy_redcap.Rd</code></div> <div class="d-none name"><code>easy_redcap.Rd</code></div>
</div> </div>
@ -64,31 +49,31 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>project.name</dt>
<dl><dt id="arg-project-name">project.name<a class="anchor" aria-label="anchor" href="#arg-project-name"></a></dt>
<dd><p>The name of the current project (for key storage with <dd><p>The name of the current project (for key storage with
`keyring::key_set()`, using the default keyring)</p></dd> `keyring::key_set()`, using the default keyring)</p></dd>
<dt>widen.data</dt> <dt id="arg-widen-data">widen.data<a class="anchor" aria-label="anchor" href="#arg-widen-data"></a></dt>
<dd><p>argument to widen the exported data</p></dd> <dd><p>argument to widen the exported data</p></dd>
<dt>uri</dt> <dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
<dd><p>REDCap database API uri</p></dd> <dd><p>REDCap database API uri</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>arguments passed on to `REDCapCAST::read_redcap_tables()`</p></dd> <dd><p>arguments passed on to `REDCapCAST::read_redcap_tables()`</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame or list depending on widen.data</p>
<p>data.frame or list depending on widen.data</p>
</div> </div>
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<img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1> <img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>file_extension.Rd</code></div> <div class="d-none name"><code>file_extension.Rd</code></div>
</div> </div>
@ -64,15 +49,15 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>filenames</dt>
<dl><dt id="arg-filenames">filenames<a class="anchor" aria-label="anchor" href="#arg-filenames"></a></dt>
<dd><p>file names</p></dd> <dd><p>file names</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -83,7 +68,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "ks" "" </span> <span class="r-out co"><span class="r-pr">#&gt;</span> [1] "ks" "" </span>
</code></pre></div> </code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>focused_metadata</h1> <img src="../logo.png" class="logo" alt=""><h1>focused_metadata</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>focused_metadata.Rd</code></div> <div class="d-none name"><code>focused_metadata.Rd</code></div>
</div> </div>
@ -64,22 +49,22 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>metadata</dt>
<dl><dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
<dd><p>A dataframe containing metadata</p></dd> <dd><p>A dataframe containing metadata</p></dd>
<dt>vars_in_data</dt> <dt id="arg-vars-in-data">vars_in_data<a class="anchor" aria-label="anchor" href="#arg-vars-in-data"></a></dt>
<dd><p>Vector of variable names in the dataset</p></dd> <dd><p>Vector of variable names in the dataset</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>A dataframe containing metadata for the variables in the dataset</p>
<p>A dataframe containing metadata for the variables in the dataset</p>
</div> </div>
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charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Sub-header formatting wrapper — format_subheader • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Sub-header formatting wrapper — format_subheader"><meta name="description" content="Sub-header formatting wrapper"><meta property="og:description" content="Sub-header formatting wrapper"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -49,7 +34,7 @@
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1> <img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>format_subheader.Rd</code></div> <div class="d-none name"><code>format_subheader.Rd</code></div>
</div> </div>
@ -64,19 +49,19 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>character vector</p></dd> <dd><p>character vector</p></dd>
<dt>tag</dt> <dt id="arg-tag">tag<a class="anchor" aria-label="anchor" href="#arg-tag"></a></dt>
<dd><p>character vector length 1</p></dd> <dd><p>character vector length 1</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -85,7 +70,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="rich-text-field-label"&gt;&lt;h2&gt;Instrument header&lt;/h2&gt;&lt;/div&gt;</span> <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="rich-text-field-label"&gt;&lt;h2&gt;Instrument header&lt;/h2&gt;&lt;/div&gt;</span>
</code></pre></div> </code></pre></div>
</div> </div>
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@ -94,7 +79,7 @@
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55
reference/get_api_key.html
View File

@ -1,16 +1,13 @@
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<a class="nav-link" href="../news/index.html">Changelog</a> <li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</li>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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@ -49,7 +34,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Retrieve project API key if stored, if not, set and retrieve</h1> <img src="../logo.png" class="logo" alt=""><h1>Retrieve project API key if stored, if not, set and retrieve</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
<div class="d-none name"><code>get_api_key.Rd</code></div> <div class="d-none name"><code>get_api_key.Rd</code></div>
</div> </div>
@ -64,18 +49,18 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>key.name</dt>
<dl><dt id="arg-key-name">key.name<a class="anchor" aria-label="anchor" href="#arg-key-name"></a></dt>
<dd><p>character vector of key name</p></dd> <dd><p>character vector of key name</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -84,7 +69,7 @@
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55
reference/get_id_name.html
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@ -1,16 +1,13 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -49,7 +34,7 @@
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Get the id name</h1> <img src="../logo.png" class="logo" alt=""><h1>Get the id name</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>get_id_name.Rd</code></div> <div class="d-none name"><code>get_id_name.Rd</code></div>
</div> </div>
@ -64,18 +49,18 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data frame or list</p></dd> <dd><p>data frame or list</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
</div> </div>
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hoping for a tiny bit of naming consistency. R does not include a time-only hoping for a tiny bit of naming consistency. R does not include a time-only
data format natively, so the "hms" class from `readr` is used. This data format natively, so the "hms" class from `readr` is used. This
has to be converted to character class before REDCap upload.'><title>Try at determining which are true time only variables — guess_time_only_filter • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Try at determining which are true time only variables — guess_time_only_filter"><meta property="og:description" content='This is just a try at guessing data type based on data class and column names has to be converted to character class before REDCap upload.'><meta property="og:description" content='This is just a try at guessing data type based on data class and column names
hoping for a tiny bit of naming consistency. R does not include a time-only hoping for a tiny bit of naming consistency. R does not include a time-only
data format natively, so the "hms" class from `readr` is used. This data format natively, so the "hms" class from `readr` is used. This
has to be converted to character class before REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> has to be converted to character class before REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1> <img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>guess_time_only_filter.Rd</code></div> <div class="d-none name"><code>guess_time_only_filter.Rd</code></div>
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@ -78,27 +63,27 @@ has to be converted to character class before REDCap upload.</p>
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data set</p></dd> <dd><p>data set</p></dd>
<dt>validate</dt> <dt id="arg-validate">validate<a class="anchor" aria-label="anchor" href="#arg-validate"></a></dt>
<dd><p>flag to output validation data. Will output list.</p></dd> <dd><p>flag to output validation data. Will output list.</p></dd>
<dt>sel.pos</dt> <dt id="arg-sel-pos">sel.pos<a class="anchor" aria-label="anchor" href="#arg-sel-pos"></a></dt>
<dd><p>Positive selection regex string</p></dd> <dd><p>Positive selection regex string</p></dd>
<dt>sel.neg</dt> <dt id="arg-sel-neg">sel.neg<a class="anchor" aria-label="anchor" href="#arg-sel-neg"></a></dt>
<dd><p>Negative selection regex string</p></dd> <dd><p>Negative selection regex string</p></dd>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector or list depending on `validate` flag.</p>
<p>character vector or list depending on `validate` flag.</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -144,7 +129,7 @@ has to be converted to character class before REDCap upload.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div> </code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1> <img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>hms2character.Rd</code></div> <div class="d-none name"><code>hms2character.Rd</code></div>
</div> </div>
@ -64,15 +49,15 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data set</p></dd> <dd><p>data set</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame or tibble</p>
<p>data.frame or tibble</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -81,7 +66,7 @@
<span class="r-in"><span><span class="co">## data |&gt; time_only_correction() |&gt; hms2character()</span></span></span> <span class="r-in"><span><span class="co">## data |&gt; time_only_correction() |&gt; hms2character()</span></span></span>
</code></pre></div> </code></pre></div>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -49,7 +34,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1> <img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>html_tag_wrap.Rd</code></div> <div class="d-none name"><code>html_tag_wrap.Rd</code></div>
</div> </div>
@ -64,23 +49,23 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>character vector</p></dd> <dd><p>character vector</p></dd>
<dt>tag</dt> <dt id="arg-tag">tag<a class="anchor" aria-label="anchor" href="#arg-tag"></a></dt>
<dd><p>character vector length 1</p></dd> <dd><p>character vector length 1</p></dd>
<dt>extra</dt> <dt id="arg-extra">extra<a class="anchor" aria-label="anchor" href="#arg-extra"></a></dt>
<dd><p>character vector</p></dd> <dd><p>character vector</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -91,7 +76,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;h2&gt;Titel&lt;/h2&gt;</span> <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;h2&gt;Titel&lt;/h2&gt;</span>
</code></pre></div> </code></pre></div>
</div> </div>
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@ -100,7 +85,7 @@
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<li class="nav-item"> <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
<a class="nav-link" href="../news/index.html">Changelog</a> <li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</li>
</ul><form class="form-inline my-2 my-lg-0" role="search">
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span>
</a>
</li>
</ul></div> </ul></div>
@ -48,7 +33,7 @@
</nav><div class="container template-reference-index"> </nav><div class="container template-reference-index">
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Function reference</h1> <img src="../logo.png" class="logo" alt=""><h1>Package index</h1>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -57,7 +42,7 @@
</div><div id="" class="section level2"> </div><div class="section level2">
@ -65,221 +50,265 @@
<dl><dt> <dl><dt>
<code><a href="REDCap_split.html">REDCap_split()</a></code> <code><a href="REDCap_split.html">REDCap_split()</a></code>
</dt> </dt>
<dd>Split REDCap repeating instruments table into multiple tables</dd> <dd>Split REDCap repeating instruments table into multiple tables</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="case_match_regex_list.html">case_match_regex_list()</a></code> <code><a href="case_match_regex_list.html">case_match_regex_list()</a></code>
</dt> </dt>
<dd>List-base regex case_when</dd> <dd>List-base regex case_when</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="char2choice.html">char2choice()</a></code> <code><a href="char2choice.html">char2choice()</a></code>
</dt> </dt>
<dd>Simple function to generate REDCap choices from character vector</dd> <dd>Simple function to generate REDCap choices from character vector</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="char2cond.html">char2cond()</a></code> <code><a href="char2cond.html">char2cond()</a></code>
</dt> </dt>
<dd>Simple function to generate REDCap branching logic from character vector</dd> <dd>Simple function to generate REDCap branching logic from character vector</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="clean_redcap_name.html">clean_redcap_name()</a></code> <code><a href="clean_redcap_name.html">clean_redcap_name()</a></code>
</dt> </dt>
<dd>clean_redcap_name</dd> <dd>clean_redcap_name</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="create_html_table.html">create_html_table()</a></code> <code><a href="create_html_table.html">create_html_table()</a></code>
</dt> </dt>
<dd>Create two-column HTML table for data piping in REDCap instruments</dd> <dd>Create two-column HTML table for data piping in REDCap instruments</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code> <code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
</dt> </dt>
<dd>Create zips file with necessary content based on data set</dd> <dd>Create zips file with necessary content based on data set</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="d2w.html">d2w()</a></code> <code><a href="d2w.html">d2w()</a></code>
</dt> </dt>
<dd>Convert single digits to words</dd> <dd>Convert single digits to words</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="doc2dd.html">doc2dd()</a></code> <code><a href="doc2dd.html">doc2dd()</a></code>
</dt> </dt>
<dd>Doc table to data dictionary - EARLY, DOCS MISSING</dd> <dd>Doc table to data dictionary - EARLY, DOCS MISSING</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="ds2dd.html">ds2dd()</a></code> <code><a href="ds2dd.html">ds2dd()</a></code>
</dt> </dt>
<dd>(DEPRECATED) Data set to data dictionary function</dd> <dd>(DEPRECATED) Data set to data dictionary function</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="ds2dd_detailed.html">ds2dd_detailed()</a></code> <code><a href="ds2dd_detailed.html">ds2dd_detailed()</a></code>
</dt> </dt>
<dd>Extract data from stata file for data dictionary</dd> <dd>Extract data from stata file for data dictionary</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="easy_redcap.html">easy_redcap()</a></code> <code><a href="easy_redcap.html">easy_redcap()</a></code>
</dt> </dt>
<dd>Secure API key storage and data acquisition in one</dd> <dd>Secure API key storage and data acquisition in one</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="file_extension.html">file_extension()</a></code> <code><a href="file_extension.html">file_extension()</a></code>
</dt> </dt>
<dd>Helper to import files correctly</dd> <dd>Helper to import files correctly</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="focused_metadata.html">focused_metadata()</a></code> <code><a href="focused_metadata.html">focused_metadata()</a></code>
</dt> </dt>
<dd>focused_metadata</dd> <dd>focused_metadata</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="format_subheader.html">format_subheader()</a></code> <code><a href="format_subheader.html">format_subheader()</a></code>
</dt> </dt>
<dd>Sub-header formatting wrapper</dd> <dd>Sub-header formatting wrapper</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="get_api_key.html">get_api_key()</a></code> <code><a href="get_api_key.html">get_api_key()</a></code>
</dt> </dt>
<dd>Retrieve project API key if stored, if not, set and retrieve</dd> <dd>Retrieve project API key if stored, if not, set and retrieve</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="get_id_name.html">get_id_name()</a></code> <code><a href="get_id_name.html">get_id_name()</a></code>
</dt> </dt>
<dd>Get the id name</dd> <dd>Get the id name</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="guess_time_only_filter.html">guess_time_only_filter()</a></code> <code><a href="guess_time_only_filter.html">guess_time_only_filter()</a></code>
</dt> </dt>
<dd>Try at determining which are true time only variables</dd> <dd>Try at determining which are true time only variables</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="hms2character.html">hms2character()</a></code> <code><a href="hms2character.html">hms2character()</a></code>
</dt> </dt>
<dd>Change "hms" to "character" for REDCap upload.</dd> <dd>Change "hms" to "character" for REDCap upload.</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="html_tag_wrap.html">html_tag_wrap()</a></code> <code><a href="html_tag_wrap.html">html_tag_wrap()</a></code>
</dt> </dt>
<dd>Simple html tag wrapping for REDCap text formatting</dd> <dd>Simple html tag wrapping for REDCap text formatting</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="is_missing.html">is_missing()</a></code> <code><a href="is_missing.html">is_missing()</a></code>
</dt> </dt>
<dd>Multi missing check</dd> <dd>Multi missing check</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code> <code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code>
</dt> </dt>
<dd>Test if repeatable or longitudinal</dd> <dd>Test if repeatable or longitudinal</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="mark_complete.html">mark_complete()</a></code> <code><a href="mark_complete.html">mark_complete()</a></code>
</dt> </dt>
<dd>Completion marking based on completed upload</dd> <dd>Completion marking based on completed upload</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="match_fields_to_form.html">match_fields_to_form()</a></code> <code><a href="match_fields_to_form.html">match_fields_to_form()</a></code>
</dt> </dt>
<dd>Match fields to forms</dd> <dd>Match fields to forms</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="mtcars_redcap.html">mtcars_redcap</a></code> <code><a href="mtcars_redcap.html">mtcars_redcap</a></code>
</dt> </dt>
<dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd> <dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="process_user_input.html">process_user_input()</a></code> <code><a href="process_user_input.html">process_user_input()</a></code>
</dt> </dt>
<dd>User input processing</dd> <dd>User input processing</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="process_user_input.character.html">process_user_input(<i>&lt;character&gt;</i>)</a></code> <code><a href="process_user_input.character.html">process_user_input(<i>&lt;character&gt;</i>)</a></code>
</dt> </dt>
<dd>User input processing character</dd> <dd>User input processing character</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="process_user_input.data.frame.html">process_user_input(<i>&lt;data.frame&gt;</i>)</a></code> <code><a href="process_user_input.data.frame.html">process_user_input(<i>&lt;data.frame&gt;</i>)</a></code>
</dt> </dt>
<dd>User input processing data.frame</dd> <dd>User input processing data.frame</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="process_user_input.default.html">process_user_input(<i>&lt;default&gt;</i>)</a></code> <code><a href="process_user_input.default.html">process_user_input(<i>&lt;default&gt;</i>)</a></code>
</dt> </dt>
<dd>User input processing default</dd> <dd>User input processing default</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="process_user_input.response.html">process_user_input(<i>&lt;response&gt;</i>)</a></code> <code><a href="process_user_input.response.html">process_user_input(<i>&lt;response&gt;</i>)</a></code>
</dt> </dt>
<dd>User input processing response</dd> <dd>User input processing response</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="read_input.html">read_input()</a></code> <code><a href="read_input.html">read_input()</a></code>
</dt> </dt>
<dd>Flexible file import based on extension</dd> <dd>Flexible file import based on extension</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code> <code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code>
</dt> </dt>
<dd>Convenience function to download complete instrument, using token storage in keyring.</dd> <dd>Convenience function to download complete instrument, using token storage in keyring.</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="read_redcap_tables.html">read_redcap_tables()</a></code> <code><a href="read_redcap_tables.html">read_redcap_tables()</a></code>
</dt> </dt>
<dd>Download REDCap data</dd> <dd>Download REDCap data</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="redcap_wider.html">redcap_wider()</a></code> <code><a href="redcap_wider.html">redcap_wider()</a></code>
</dt> </dt>
<dd>Redcap Wider</dd> <dd>Redcap Wider</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="redcapcast_data.html">redcapcast_data</a></code> <code><a href="redcapcast_data.html">redcapcast_data</a></code>
</dt> </dt>
<dd>Data set for demonstration</dd> <dd>Data set for demonstration</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="redcapcast_meta.html">redcapcast_meta</a></code> <code><a href="redcapcast_meta.html">redcapcast_meta</a></code>
</dt> </dt>
<dd>REDCap metadata from data base</dd> <dd>REDCap metadata from data base</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="replace_curly_quote.html">replace_curly_quote()</a></code> <code><a href="replace_curly_quote.html">replace_curly_quote()</a></code>
</dt> </dt>
<dd>Replace curly apostrophes and quotes from word</dd> <dd>Replace curly apostrophes and quotes from word</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="sanitize_split.html">sanitize_split()</a></code> <code><a href="sanitize_split.html">sanitize_split()</a></code>
</dt> </dt>
<dd>Sanitize list of data frames</dd> <dd>Sanitize list of data frames</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="server_factory.html">server_factory()</a></code> <code><a href="server_factory.html">server_factory()</a></code>
</dt> </dt>
<dd>Shiny server factory</dd> <dd>Shiny server factory</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="shiny_cast.html">shiny_cast()</a></code> <code><a href="shiny_cast.html">shiny_cast()</a></code>
</dt> </dt>
<dd>Launch the included Shiny-app for database casting and upload</dd> <dd>Launch the included Shiny-app for database casting and upload</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="split_non_repeating_forms.html">split_non_repeating_forms()</a></code> <code><a href="split_non_repeating_forms.html">split_non_repeating_forms()</a></code>
</dt> </dt>
<dd>Split a data frame into separate tables for each form</dd> <dd>Split a data frame into separate tables for each form</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="strsplitx.html">strsplitx()</a></code> <code><a href="strsplitx.html">strsplitx()</a></code>
</dt> </dt>
<dd>Extended string splitting</dd> <dd>Extended string splitting</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="time_only_correction.html">time_only_correction()</a></code> <code><a href="time_only_correction.html">time_only_correction()</a></code>
</dt> </dt>
<dd>Correction based on time_only_filter function</dd> <dd>Correction based on time_only_filter function</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="ui_factory.html">ui_factory()</a></code> <code><a href="ui_factory.html">ui_factory()</a></code>
</dt> </dt>
<dd>UI factory for shiny app</dd> <dd>UI factory for shiny app</dd>
</dl></div> </dl></div>
@ -291,7 +320,7 @@
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
</div> </div>
</footer></div> </footer></div>

57
reference/is_missing.html
View File

@ -1,16 +1,13 @@
<!DOCTYPE html> <!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Multi missing check"><title>Multi missing check — is_missing • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Multi missing check — is_missing"><meta property="og:description" content="Multi missing check"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Multi missing check — is_missing • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Multi missing check — is_missing"><meta name="description" content="Multi missing check"><meta property="og:description" content="Multi missing check"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body>
<a href="#main" class="visually-hidden-focusable">Skip to contents</a> <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -18,29 +15,17 @@
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<img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1> <img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
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@ -64,22 +49,22 @@
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<dl><dt>data</dt>
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<dt>nas</dt> <dt id="arg-nas">nas<a class="anchor" aria-label="anchor" href="#arg-nas"></a></dt>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>logical vector</p>
<p>logical vector</p>
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<img src="../logo.png" class="logo" alt=""><h1>Test if repeatable or longitudinal</h1> <img src="../logo.png" class="logo" alt=""><h1>Test if repeatable or longitudinal</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>is_repeated_longitudinal.Rd</code></div> <div class="d-none name"><code>is_repeated_longitudinal.Rd</code></div>
</div> </div>
@ -67,20 +52,20 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data set</p></dd> <dd><p>data set</p></dd>
<dt>generics</dt> <dt id="arg-generics">generics<a class="anchor" aria-label="anchor" href="#arg-generics"></a></dt>
<dd><p>default is "redcap_event_name", "redcap_repeat_instrument" <dd><p>default is "redcap_event_name", "redcap_repeat_instrument"
and "redcap_repeat_instance"</p></dd> and "redcap_repeat_instance"</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>logical</p>
<p>logical</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -93,7 +78,7 @@ and "redcap_repeat_instance"</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] TRUE</span> <span class="r-out co"><span class="r-pr">#&gt;</span> [1] TRUE</span>
</code></pre></div> </code></pre></div>
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@ -102,7 +87,7 @@ and "redcap_repeat_instance"</p></dd>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -49,7 +34,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1> <img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>mark_complete.Rd</code></div> <div class="d-none name"><code>mark_complete.Rd</code></div>
</div> </div>
@ -64,22 +49,22 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>upload</dt>
<dl><dt id="arg-upload">upload<a class="anchor" aria-label="anchor" href="#arg-upload"></a></dt>
<dd><p>output list from `REDCapR::redcap_write()`</p></dd> <dd><p>output list from `REDCapR::redcap_write()`</p></dd>
<dt>ls</dt> <dt id="arg-ls">ls<a class="anchor" aria-label="anchor" href="#arg-ls"></a></dt>
<dd><p>output list from `ds2dd_detailed()`</p></dd> <dd><p>output list from `ds2dd_detailed()`</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list with `REDCapR::redcap_write()` results</p>
<p>list with `REDCapR::redcap_write()` results</p>
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reference/match_fields_to_form.html
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@ -1,16 +1,13 @@
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@ -49,7 +34,7 @@
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Match fields to forms</h1> <img src="../logo.png" class="logo" alt=""><h1>Match fields to forms</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>match_fields_to_form.Rd</code></div> <div class="d-none name"><code>match_fields_to_form.Rd</code></div>
</div> </div>
@ -64,22 +49,22 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>metadata</dt>
<dl><dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
<dd><p>A data frame containing field names and form names</p></dd> <dd><p>A data frame containing field names and form names</p></dd>
<dt>vars_in_data</dt> <dt id="arg-vars-in-data">vars_in_data<a class="anchor" aria-label="anchor" href="#arg-vars-in-data"></a></dt>
<dd><p>A character vector of variable names</p></dd> <dd><p>A character vector of variable names</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>A data frame containing field names and form names</p>
<p>A data frame containing field names and form names</p>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -88,7 +73,7 @@
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47
reference/mtcars_redcap.html
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@ -1,16 +1,13 @@
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@ -18,29 +15,17 @@
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@ -49,7 +34,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1> <img src="../logo.png" class="logo" alt=""><h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
<div class="d-none name"><code>mtcars_redcap.Rd</code></div> <div class="d-none name"><code>mtcars_redcap.Rd</code></div>
</div> </div>
@ -107,7 +92,7 @@
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@ -116,7 +101,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1> <img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.character.Rd</code></div> <div class="d-none name"><code>process_user_input.character.Rd</code></div>
</div> </div>
@ -59,28 +44,28 @@
<div class="section level2"> <div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for character</span></span> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'character'</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div> <span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>input</p></dd> <dd><p>input</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>ignored</p></dd> <dd><p>ignored</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
<p>processed input</p>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1> <img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.data.frame.Rd</code></div> <div class="d-none name"><code>process_user_input.data.frame.Rd</code></div>
</div> </div>
@ -59,28 +44,28 @@
<div class="section level2"> <div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for data.frame</span></span> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'data.frame'</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div> <span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>input</p></dd> <dd><p>input</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>ignored</p></dd> <dd><p>ignored</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
<p>processed input</p>
</div> </div>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1> <img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.default.Rd</code></div> <div class="d-none name"><code>process_user_input.default.Rd</code></div>
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@ -59,28 +44,28 @@
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for default</span></span> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># Default S3 method</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div> <span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>input</p></dd> <dd><p>input</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>ignored</p></dd> <dd><p>ignored</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
<p>processed input</p>
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@ -49,7 +34,7 @@
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<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing</h1> <img src="../logo.png" class="logo" alt=""><h1>User input processing</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.Rd</code></div> <div class="d-none name"><code>process_user_input.Rd</code></div>
</div> </div>
@ -64,18 +49,18 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>input</p></dd> <dd><p>input</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
<p>processed input</p>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -84,7 +69,7 @@
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59
reference/process_user_input.response.html
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@ -1,16 +1,13 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -49,7 +34,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1> <img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.response.Rd</code></div> <div class="d-none name"><code>process_user_input.response.Rd</code></div>
</div> </div>
@ -59,28 +44,28 @@
<div class="section level2"> <div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for response</span></span> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'response'</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div> <span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>input</p></dd> <dd><p>input</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>ignored</p></dd> <dd><p>ignored</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
<p>processed input</p>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -89,7 +74,7 @@
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57
reference/read_input.html
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@ -1,16 +1,13 @@
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<img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1> <img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>read_input.Rd</code></div> <div class="d-none name"><code>read_input.Rd</code></div>
</div> </div>
@ -64,19 +49,19 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>file</dt>
<dl><dt id="arg-file">file<a class="anchor" aria-label="anchor" href="#arg-file"></a></dt>
<dd><p>file name</p></dd> <dd><p>file name</p></dd>
<dt>consider.na</dt> <dt id="arg-consider-na">consider.na<a class="anchor" aria-label="anchor" href="#arg-consider-na"></a></dt>
<dd><p>character vector of strings to consider as NAs</p></dd> <dd><p>character vector of strings to consider as NAs</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>tibble</p>
<p>tibble</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -105,7 +90,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 18 more rows</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 18 more rows</span></span>
</code></pre></div> </code></pre></div>
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</li> </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
<li class="nav-item"> <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
<a class="nav-link" href="../news/index.html">Changelog</a> <li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</li>
</ul><form class="form-inline my-2 my-lg-0" role="search">
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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</ul></div> </ul></div>
@ -51,7 +36,7 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1> <img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>read_redcap_instrument.Rd</code></div> <div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
</div> </div>
@ -74,39 +59,39 @@ in keyring.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>key</dt>
<dl><dt id="arg-key">key<a class="anchor" aria-label="anchor" href="#arg-key"></a></dt>
<dd><p>key name in standard keyring for token retrieval.</p></dd> <dd><p>key name in standard keyring for token retrieval.</p></dd>
<dt>uri</dt> <dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
<dd><p>REDCap database API uri</p></dd> <dd><p>REDCap database API uri</p></dd>
<dt>instrument</dt> <dt id="arg-instrument">instrument<a class="anchor" aria-label="anchor" href="#arg-instrument"></a></dt>
<dd><p>instrument name</p></dd> <dd><p>instrument name</p></dd>
<dt>raw_or_label</dt> <dt id="arg-raw-or-label">raw_or_label<a class="anchor" aria-label="anchor" href="#arg-raw-or-label"></a></dt>
<dd><p>raw or label passed to `REDCapR::redcap_read()`</p></dd> <dd><p>raw or label passed to `REDCapR::redcap_read()`</p></dd>
<dt>id_name</dt> <dt id="arg-id-name">id_name<a class="anchor" aria-label="anchor" href="#arg-id-name"></a></dt>
<dd><p>id variable name. Default is "record_id".</p></dd> <dd><p>id variable name. Default is "record_id".</p></dd>
<dt>records</dt> <dt id="arg-records">records<a class="anchor" aria-label="anchor" href="#arg-records"></a></dt>
<dd><p>specify the records to download. Index numbers. <dd><p>specify the records to download. Index numbers.
Numeric vector.</p></dd> Numeric vector.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame</p>
<p>data.frame</p>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
</nav></aside></div> </nav></aside></div>
@ -115,7 +100,7 @@ Numeric vector.</p></dd>
</div> </div>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
</div> </div>
</footer></div> </footer></div>

73
reference/read_redcap_tables.html
View File

@ -1,24 +1,21 @@
<!DOCTYPE html> <!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Implementation of REDCap_split with a focused data acquisition approach using <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Download REDCap data — read_redcap_tables • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Download REDCap data — read_redcap_tables"><meta name="description" content="Implementation of REDCap_split with a focused data acquisition approach using
REDCapR::redcap_read and only downloading specified fields, forms and/or REDCapR::redcap_read and only downloading specified fields, forms and/or
events using the built-in focused_metadata including some clean-up. events using the built-in focused_metadata including some clean-up.
Works with classical and longitudinal projects with or without repeating Works with classical and longitudinal projects with or without repeating
instruments."><title>Download REDCap data — read_redcap_tables • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Download REDCap data — read_redcap_tables"><meta property="og:description" content="Implementation of REDCap_split with a focused data acquisition approach using instruments."><meta property="og:description" content="Implementation of REDCap_split with a focused data acquisition approach using
REDCapR::redcap_read and only downloading specified fields, forms and/or REDCapR::redcap_read and only downloading specified fields, forms and/or
events using the built-in focused_metadata including some clean-up. events using the built-in focused_metadata including some clean-up.
Works with classical and longitudinal projects with or without repeating Works with classical and longitudinal projects with or without repeating
instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -26,29 +23,17 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
</button> </button>
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<ul class="navbar-nav me-auto"><li class="active nav-item"> <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a> <li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a> <li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
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<a class="nav-link" href="../news/index.html">Changelog</a> <li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</li>
</ul><form class="form-inline my-2 my-lg-0" role="search">
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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</a>
</li>
</ul></div> </ul></div>
@ -57,7 +42,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Download REDCap data</h1> <img src="../logo.png" class="logo" alt=""><h1>Download REDCap data</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
<div class="d-none name"><code>read_redcap_tables.Rd</code></div> <div class="d-none name"><code>read_redcap_tables.Rd</code></div>
</div> </div>
@ -85,44 +70,44 @@ instruments.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>uri</dt>
<dl><dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
<dd><p>REDCap database API uri</p></dd> <dd><p>REDCap database API uri</p></dd>
<dt>token</dt> <dt id="arg-token">token<a class="anchor" aria-label="anchor" href="#arg-token"></a></dt>
<dd><p>API token</p></dd> <dd><p>API token</p></dd>
<dt>records</dt> <dt id="arg-records">records<a class="anchor" aria-label="anchor" href="#arg-records"></a></dt>
<dd><p>records to download</p></dd> <dd><p>records to download</p></dd>
<dt>fields</dt> <dt id="arg-fields">fields<a class="anchor" aria-label="anchor" href="#arg-fields"></a></dt>
<dd><p>fields to download</p></dd> <dd><p>fields to download</p></dd>
<dt>events</dt> <dt id="arg-events">events<a class="anchor" aria-label="anchor" href="#arg-events"></a></dt>
<dd><p>events to download</p></dd> <dd><p>events to download</p></dd>
<dt>forms</dt> <dt id="arg-forms">forms<a class="anchor" aria-label="anchor" href="#arg-forms"></a></dt>
<dd><p>forms to download</p></dd> <dd><p>forms to download</p></dd>
<dt>raw_or_label</dt> <dt id="arg-raw-or-label">raw_or_label<a class="anchor" aria-label="anchor" href="#arg-raw-or-label"></a></dt>
<dd><p>raw or label tags</p></dd> <dd><p>raw or label tags</p></dd>
<dt>split_forms</dt> <dt id="arg-split-forms">split_forms<a class="anchor" aria-label="anchor" href="#arg-split-forms"></a></dt>
<dd><p>Whether to split "repeating" or "all" forms, default is <dd><p>Whether to split "repeating" or "all" forms, default is
all.</p></dd> all.</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list of instruments</p>
<p>list of instruments</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -131,7 +116,7 @@ all.</p></dd>
<span class="r-in"></span> <span class="r-in"></span>
</code></pre></div> </code></pre></div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -140,7 +125,7 @@ all.</p></dd>
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63
reference/redcap_wider.html
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@ -1,18 +1,15 @@
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@ -20,29 +17,17 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
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<img src="../logo.png" class="logo" alt=""><h1>Redcap Wider</h1> <img src="../logo.png" class="logo" alt=""><h1>Redcap Wider</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
<div class="d-none name"><code>redcap_wider.Rd</code></div> <div class="d-none name"><code>redcap_wider.Rd</code></div>
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@ -71,23 +56,23 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>A list of data frames.</p></dd> <dd><p>A list of data frames.</p></dd>
<dt>event.glue</dt> <dt id="arg-event-glue">event.glue<a class="anchor" aria-label="anchor" href="#arg-event-glue"></a></dt>
<dd><p>A dplyr::glue string for repeated events naming</p></dd> <dd><p>A dplyr::glue string for repeated events naming</p></dd>
<dt>inst.glue</dt> <dt id="arg-inst-glue">inst.glue<a class="anchor" aria-label="anchor" href="#arg-inst-glue"></a></dt>
<dd><p>A dplyr::glue string for repeated instruments naming</p></dd> <dd><p>A dplyr::glue string for repeated instruments naming</p></dd>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>The list of data frames in wide format.</p>
<p>The list of data frames in wide format.</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -169,7 +154,7 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 24 36 female</span> <span class="r-out co"><span class="r-pr">#&gt;</span> 2 24 36 female</span>
</code></pre></div> </code></pre></div>
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@ -178,7 +163,7 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
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@ -51,7 +36,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
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<img src="../logo.png" class="logo" alt=""><h1>Data set for demonstration</h1> <img src="../logo.png" class="logo" alt=""><h1>Data set for demonstration</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
<div class="d-none name"><code>redcapcast_data.Rd</code></div> <div class="d-none name"><code>redcapcast_data.Rd</code></div>
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@ -143,7 +128,7 @@ Contains only synthetic data.</p>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -152,7 +137,7 @@ Contains only synthetic data.</p>
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@ -1,16 +1,13 @@
<!DOCTYPE html> <!DOCTYPE html>
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charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCap metadata from data base — redcapcast_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap metadata from data base — redcapcast_meta"><meta name="description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -18,29 +15,17 @@
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@ -49,7 +34,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>REDCap metadata from data base</h1> <img src="../logo.png" class="logo" alt=""><h1>REDCap metadata from data base</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
<div class="d-none name"><code>redcapcast_meta.Rd</code></div> <div class="d-none name"><code>redcapcast_meta.Rd</code></div>
</div> </div>
@ -121,7 +106,7 @@
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@ -130,7 +115,7 @@
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@ -1,18 +1,15 @@
<!DOCTYPE html> <!DOCTYPE html>
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<img src="../logo.png" class="logo" alt=""><h1>Replace curly apostrophes and quotes from word</h1> <img src="../logo.png" class="logo" alt=""><h1>Replace curly apostrophes and quotes from word</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>replace_curly_quote.Rd</code></div> <div class="d-none name"><code>replace_curly_quote.Rd</code></div>
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@ -67,18 +52,18 @@ on CRAN. Github:https://github.com/trinker/textclean</p>
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<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>character vector</p></dd> <dd><p>character vector</p></dd>
</dl></div> </dl></div>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
<p>character vector</p>
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@ -1,16 +1,13 @@
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@ -49,7 +34,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Sanitize list of data frames</h1> <img src="../logo.png" class="logo" alt=""><h1>Sanitize list of data frames</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>sanitize_split.Rd</code></div> <div class="d-none name"><code>sanitize_split.Rd</code></div>
</div> </div>
@ -68,22 +53,22 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>l</dt>
<dl><dt id="arg-l">l<a class="anchor" aria-label="anchor" href="#arg-l"></a></dt>
<dd><p>A list of data frames.</p></dd> <dd><p>A list of data frames.</p></dd>
<dt>generic.names</dt> <dt id="arg-generic-names">generic.names<a class="anchor" aria-label="anchor" href="#arg-generic-names"></a></dt>
<dd><p>A vector of generic names to be excluded.</p></dd> <dd><p>A vector of generic names to be excluded.</p></dd>
</dl></div> </dl></div>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>A list of data frames with generic names excluded.</p>
<p>A list of data frames with generic names excluded.</p>
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<img src="../logo.png" class="logo" alt=""><h1>Shiny server factory</h1> <img src="../logo.png" class="logo" alt=""><h1>Shiny server factory</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>server_factory.Rd</code></div> <div class="d-none name"><code>server_factory.Rd</code></div>
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@ -64,12 +49,10 @@
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>shiny server</p>
<p>shiny server</p>
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<a class="nav-link" href="../news/index.html">Changelog</a> <li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</li>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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@ -49,7 +34,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Launch the included Shiny-app for database casting and upload</h1> <img src="../logo.png" class="logo" alt=""><h1>Launch the included Shiny-app for database casting and upload</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>shiny_cast.Rd</code></div> <div class="d-none name"><code>shiny_cast.Rd</code></div>
</div> </div>
@ -64,9 +49,7 @@
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>shiny app</p>
<p>shiny app</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -76,7 +59,7 @@
<span class="r-in"></span> <span class="r-in"></span>
</code></pre></div> </code></pre></div>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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@ -85,7 +68,7 @@
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59
reference/split_non_repeating_forms.html
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@ -1,16 +1,13 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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@ -18,29 +15,17 @@
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@ -49,7 +34,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1> <img src="../logo.png" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>split_non_repeating_forms.Rd</code></div> <div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
</div> </div>
@ -64,25 +49,25 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>table</dt>
<dl><dt id="arg-table">table<a class="anchor" aria-label="anchor" href="#arg-table"></a></dt>
<dd><p>A data frame</p></dd> <dd><p>A data frame</p></dd>
<dt>universal_fields</dt> <dt id="arg-universal-fields">universal_fields<a class="anchor" aria-label="anchor" href="#arg-universal-fields"></a></dt>
<dd><p>A character vector of fields that should be included <dd><p>A character vector of fields that should be included
in every table</p></dd> in every table</p></dd>
<dt>fields</dt> <dt id="arg-fields">fields<a class="anchor" aria-label="anchor" href="#arg-fields"></a></dt>
<dd><p>A two-column matrix containing the names of fields that should <dd><p>A two-column matrix containing the names of fields that should
be included in each form</p></dd> be included in each form</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>A list of data frames, one for each non-repeating form</p>
<p>A list of data frames, one for each non-repeating form</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -122,7 +107,7 @@ be included in each form</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div> </code></pre></div>
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@ -131,7 +116,7 @@ be included in each form</p></dd>
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67
reference/strsplitx.html
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@ -1,18 +1,15 @@
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<img src="../logo.png" class="logo" alt=""><h1>Extended string splitting</h1> <img src="../logo.png" class="logo" alt=""><h1>Extended string splitting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>strsplitx.Rd</code></div> <div class="d-none name"><code>strsplitx.Rd</code></div>
</div> </div>
@ -67,31 +52,31 @@ easing the split around the defined delimiter, see example.</p>
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>data</p></dd> <dd><p>data</p></dd>
<dt>split</dt> <dt id="arg-split">split<a class="anchor" aria-label="anchor" href="#arg-split"></a></dt>
<dd><p>delimiter</p></dd> <dd><p>delimiter</p></dd>
<dt>type</dt> <dt id="arg-type">type<a class="anchor" aria-label="anchor" href="#arg-type"></a></dt>
<dd><p>Split type. Can be c("classic", "before", "after", "around")</p></dd> <dd><p>Split type. Can be c("classic", "before", "after", "around")</p></dd>
<dt>perl</dt> <dt id="arg-perl">perl<a class="anchor" aria-label="anchor" href="#arg-perl"></a></dt>
<dd><p>perl param from strsplit()</p></dd> <dd><p>perl param from strsplit()</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>additional parameters are passed to base strsplit handling splits</p></dd> <dd><p>additional parameters are passed to base strsplit handling splits</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list</p>
<p>list</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -113,7 +98,7 @@ easing the split around the defined delimiter, see example.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div> </code></pre></div>
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<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a> <li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a> <li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a> </ul></li>
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<li class="nav-item"> <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
<a class="nav-link" href="../news/index.html">Changelog</a> <li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</li>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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@ -49,7 +34,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function</h1> <img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>time_only_correction.Rd</code></div> <div class="d-none name"><code>time_only_correction.Rd</code></div>
</div> </div>
@ -64,19 +49,19 @@
<div class="section level2"> <div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data set</p></dd> <dd><p>data set</p></dd>
<dt>...</dt> <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>arguments passed on to `guess_time_only_filter()`</p></dd> <dd><p>arguments passed on to `guess_time_only_filter()`</p></dd>
</dl></div> </dl></div>
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>tibble</p>
<p>tibble</p>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -85,7 +70,7 @@
<span class="r-in"><span><span class="co">## data |&gt; time_only_correction()</span></span></span> <span class="r-in"><span><span class="co">## data |&gt; time_only_correction()</span></span></span>
</code></pre></div> </code></pre></div>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
</nav></aside></div> </nav></aside></div>
@ -94,7 +79,7 @@
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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51
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@ -1,16 +1,13 @@
<!DOCTYPE html> <!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="UI factory for shiny app"><title>UI factory for shiny app — ui_factory • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="UI factory for shiny app — ui_factory"><meta property="og:description" content="UI factory for shiny app"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>UI factory for shiny app — ui_factory • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="UI factory for shiny app — ui_factory"><meta name="description" content="UI factory for shiny app"><meta property="og:description" content="UI factory for shiny app"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -18,29 +15,17 @@
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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@ -49,7 +34,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>UI factory for shiny app</h1> <img src="../logo.png" class="logo" alt=""><h1>UI factory for shiny app</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>ui_factory.Rd</code></div> <div class="d-none name"><code>ui_factory.Rd</code></div>
</div> </div>
@ -64,12 +49,10 @@
<div class="section level2"> <div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>shiny ui</p>
<p>shiny ui</p>
</div> </div>
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@ -78,7 +61,7 @@
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<?xml version="1.0" encoding="UTF-8"?> <urlset xmlns = 'http://www.sitemaps.org/schemas/sitemap/0.9'>
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