mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-11-22 13:30:23 +01:00
we have a working prototype! needs a bit of cleaning
This commit is contained in:
parent
77989a21ed
commit
29cf7b2745
@ -6,6 +6,28 @@ server_factory <- function() {
|
|||||||
function(input, output, session) {
|
function(input, output, session) {
|
||||||
require(REDCapCAST)
|
require(REDCapCAST)
|
||||||
|
|
||||||
|
|
||||||
|
## Trial and error testing
|
||||||
|
# dat <- read_input(file = here::here("data/mtcars_redcap.csv"))
|
||||||
|
#
|
||||||
|
# dd <- ds2dd_detailed(data = dat)
|
||||||
|
#
|
||||||
|
# write.csv(purrr::pluck(dd, "meta"),file = "dd_test.csv",row.names = FALSE,na = "")
|
||||||
|
#
|
||||||
|
# View(as.data.frame(purrr::pluck(dd, "meta")))
|
||||||
|
#
|
||||||
|
# REDCapR::redcap_metadata_write(
|
||||||
|
# ds = as.data.frame(purrr::pluck(dd, "meta")),
|
||||||
|
# redcap_uri = "https://redcap.au.dk/api/",
|
||||||
|
# token = "21CF2C17EA1CA4F3688DF991C8FE3EBF"
|
||||||
|
# )
|
||||||
|
#
|
||||||
|
# REDCapR::redcap_write(
|
||||||
|
# ds = as.data.frame(purrr::pluck(dd, "data")),
|
||||||
|
# redcap_uri = "https://redcap.au.dk/api/",
|
||||||
|
# token = "21CF2C17EA1CA4F3688DF991C8FE3EBF"
|
||||||
|
# )
|
||||||
|
|
||||||
dat <- shiny::reactive({
|
dat <- shiny::reactive({
|
||||||
shiny::req(input$ds)
|
shiny::req(input$ds)
|
||||||
|
|
||||||
@ -45,33 +67,46 @@ server_factory <- function() {
|
|||||||
write.csv(purrr::pluck(dd(), "meta"), file, row.names = FALSE)
|
write.csv(purrr::pluck(dd(), "meta"), file, row.names = FALSE)
|
||||||
}
|
}
|
||||||
)
|
)
|
||||||
output$upload.data.print <- shiny::renderPrint({
|
|
||||||
shiny::eventReactive(input$upload.meta, {
|
output_staging <- shiny::reactiveValues()
|
||||||
|
output_staging$meta <- output_staging$data <- NA
|
||||||
|
|
||||||
|
shiny::observeEvent(input$upload.meta,{ upload_meta() })
|
||||||
|
|
||||||
|
shiny::observeEvent(input$upload.data,{ upload_data() })
|
||||||
|
|
||||||
|
upload_meta <- function(){
|
||||||
|
# output_staging$title <- paste0("random number ",runif(1))
|
||||||
|
|
||||||
shiny::req(input$uri)
|
shiny::req(input$uri)
|
||||||
|
|
||||||
shiny::req(input$api)
|
shiny::req(input$api)
|
||||||
|
|
||||||
REDCapR::redcap_metadata_write(
|
output_staging$meta <- REDCapR::redcap_metadata_write(
|
||||||
ds = purrr::pluck(dd(), "meta"),
|
ds = purrr::pluck(dd(), "meta"),
|
||||||
redcap_uri = input$uri,
|
redcap_uri = input$uri,
|
||||||
token = input$api
|
token = input$api
|
||||||
)
|
)|> purrr::pluck("success")
|
||||||
})
|
}
|
||||||
})
|
|
||||||
|
upload_data <- function(){
|
||||||
|
# output_staging$title <- paste0("random number ",runif(1))
|
||||||
|
|
||||||
output$upload.data.print <- shiny::renderPrint({
|
|
||||||
shiny::eventReactive(input$upload.data, {
|
|
||||||
shiny::req(input$uri)
|
shiny::req(input$uri)
|
||||||
|
|
||||||
shiny::req(input$api)
|
shiny::req(input$api)
|
||||||
|
|
||||||
REDCapR::redcap_write(
|
output_staging$data <- REDCapR::redcap_write(
|
||||||
ds = purrr::pluck(dd(), "data"),
|
ds = purrr::pluck(dd(), "data"),
|
||||||
redcap_uri = input$uri,
|
redcap_uri = input$uri,
|
||||||
token = input$api
|
token = input$api
|
||||||
)
|
) |> purrr::pluck("success")
|
||||||
})
|
}
|
||||||
})
|
|
||||||
|
output$upload.meta.print <- renderText(output_staging$meta)
|
||||||
|
|
||||||
|
output$upload.data.print <- renderText(output_staging$data)
|
||||||
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@ -126,22 +161,22 @@ ui_factory <- function() {
|
|||||||
shiny::textInput(
|
shiny::textInput(
|
||||||
inputId = "uri",
|
inputId = "uri",
|
||||||
label = "URI",
|
label = "URI",
|
||||||
value = ""
|
value = "https://redcap.au.dk/api/"
|
||||||
),
|
),
|
||||||
shiny::textInput(
|
shiny::textInput(
|
||||||
inputId = "api",
|
inputId = "api",
|
||||||
label = "API key",
|
label = "API key",
|
||||||
value = ""
|
value = "21CF2C17EA1CA4F3688DF991C8FE3EBF"
|
||||||
),
|
),
|
||||||
shiny::actionButton(
|
shiny::actionButton(
|
||||||
inputId = "upload.meta",
|
inputId = "upload.meta",
|
||||||
label = "Upload dictionary", icon = icon("book-bookmark")
|
label = "Upload dictionary", icon = shiny::icon("book-bookmark")
|
||||||
),
|
),
|
||||||
shiny::h6("Please note, that before uploading any real data, put your project
|
shiny::h6("Please note, that before uploading any real data, put your project
|
||||||
into production mode."),
|
into production mode."),
|
||||||
shiny::actionButton(
|
shiny::actionButton(
|
||||||
inputId = "upload.datata",
|
inputId = "upload.data",
|
||||||
label = "Upload data", icon = icon("upload")
|
label = "Upload data", icon = shiny::icon("upload")
|
||||||
),
|
),
|
||||||
|
|
||||||
# Horizontal line ----
|
# Horizontal line ----
|
||||||
@ -156,9 +191,19 @@ ui_factory <- function() {
|
|||||||
shiny::tabPanel(
|
shiny::tabPanel(
|
||||||
"Summary",
|
"Summary",
|
||||||
shiny::h3("Data overview (first 20)"),
|
shiny::h3("Data overview (first 20)"),
|
||||||
shiny::htmlOutput("data.tbl", container = span),
|
shiny::htmlOutput("data.tbl", container = shiny::span),
|
||||||
shiny::h3("Dictionary overview"),
|
shiny::h3("Dictionary overview"),
|
||||||
shiny::htmlOutput("meta.tbl", container = span)
|
shiny::htmlOutput("meta.tbl", container = shiny::span)
|
||||||
|
),
|
||||||
|
## -----------------------------------------------------------------------------
|
||||||
|
## Upload tab
|
||||||
|
## -----------------------------------------------------------------------------
|
||||||
|
shiny::tabPanel(
|
||||||
|
"Upload",
|
||||||
|
shiny::h3("Meta upload overview"),
|
||||||
|
shiny::htmlOutput("upload.meta.print", container = shiny::span),
|
||||||
|
shiny::h3("Data upload overview"),
|
||||||
|
shiny::htmlOutput("upload.data.print", container = shiny::span)
|
||||||
)
|
)
|
||||||
)
|
)
|
||||||
)
|
)
|
||||||
@ -181,3 +226,7 @@ shiny_cast <- function() {
|
|||||||
server_factory()
|
server_factory()
|
||||||
)
|
)
|
||||||
}
|
}
|
||||||
|
|
||||||
|
shiny_cast()
|
||||||
|
# ds <- REDCapR::redcap_metadata_read(redcap_uri = "https://redcap.au.dk/api/",
|
||||||
|
# token = "21CF2C17EA1CA4F3688DF991C8FE3EBF")
|
||||||
|
Loading…
Reference in New Issue
Block a user