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8
404.html
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@ -16,7 +16,7 @@
<link href="https://agdamsbo.github.io/REDCapCAST/deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"> <link href="https://agdamsbo.github.io/REDCapCAST/deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
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<meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"> <meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png">
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@ -31,7 +31,7 @@
<a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -85,13 +85,11 @@ Content not found. Please use links in the navbar.
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p>
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
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</footer> </footer>

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CODE_OF_CONDUCT.html
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<!DOCTYPE html> <!DOCTYPE html>
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charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contributor Covenant Code of Conduct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Contributor Covenant Code of Conduct"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<![endif]--></head><body> <![endif]--></head><body>
@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -125,11 +125,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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8
LICENSE.html
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@ -1,5 +1,5 @@
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -254,11 +254,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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8
articles/Database-creation.html
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@ -17,7 +17,7 @@
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@ -33,7 +33,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -169,13 +169,11 @@ upload: manual or through <code>REDCapR</code>.</p>
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<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<p></p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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8
articles/Introduction.html
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@ -17,7 +17,7 @@
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -1995,13 +1995,11 @@ approach.</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -91,7 +91,7 @@
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
<p>To make the easiest possible transistion from spreadsheet/dataset to <p>To make the easiest possible transition from spreadsheet/dataset to
REDCap, I have created a small Shiny app, which adds a graphical REDCap, I have created a small Shiny app, which adds a graphical
interface to the casting of a data dictionary and data upload. Install interface to the casting of a data dictionary and data upload. Install
the package and run the app as follows:</p> the package and run the app as follows:</p>
@ -107,13 +107,11 @@ functionality, but might be extended in the future.</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -53,7 +53,7 @@
<div class="section "> <div class="section ">
<h3>All vignettes</h3> <h3>All vignettes</h3>
<p class="section-desc"></p> <div class="section-desc"></div>
<dl><dt><a href="Database-creation.html">Database-creation</a></dt> <dl><dt><a href="Database-creation.html">Database-creation</a></dt>
<dd> <dd>
@ -66,11 +66,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -70,13 +70,13 @@
<p>Damsbo A, Egeler P (2024). <p>Damsbo A, Egeler P (2024).
<em>REDCapCAST: REDCap Castellated Data Handling</em>. <em>REDCapCAST: REDCap Castellated Data Handling</em>.
R package version 24.4.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>. R package version 24.5.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
</p> </p>
<pre>@Manual{, <pre>@Manual{,
title = {REDCapCAST: REDCap Castellated Data Handling}, title = {REDCapCAST: REDCap Castellated Data Handling},
author = {Andreas Gammelgaard Damsbo and Paul Egeler}, author = {Andreas Gammelgaard Damsbo and Paul Egeler},
year = {2024}, year = {2024},
note = {R package version 24.4.1, https://agdamsbo.github.io/REDCapCAST/}, note = {R package version 24.5.1, https://agdamsbo.github.io/REDCapCAST/},
url = {https://github.com/agdamsbo/REDCapCAST}, url = {https://github.com/agdamsbo/REDCapCAST},
}</pre> }</pre>
</div> </div>
@ -85,11 +85,11 @@ R package version 24.4.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<meta property="og:description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See &lt;https://github.com/pegeler/REDCapRITS&gt;. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;; Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;)."> <meta property="og:description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See &lt;https://github.com/pegeler/REDCapRITS&gt;. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;; Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;).">
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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</div> </div>
<p>REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects.</p> <p>REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects.</p>
<p>This package is a fork of <a href="https://github.com/pegeler/REDCapRITS" class="external-link">pegeler/REDCapRITS</a>. The REDCapRITS represents great and extensive work to handle castellated REDCap data in different programming languages. This fork is purely minded on R usage and includes a few implementations of the main <code>REDCap_split</code> function.</p> <p>This package is a fork of <a href="https://github.com/pegeler/REDCapRITS" class="external-link">pegeler/REDCapRITS</a>. The REDCapRITS represents great and extensive work to handle castellated REDCap data in different programming languages. This fork is purely minded on R usage and includes a few implementations of the main <code>REDCap_split</code> function.</p>
<p>This package is very much to be seen as an attempt at a R-to-REDCap-to-R foundry for handling both the transition from dataset/variable list to database and the other way, from REDCap database to a tidy dataset. The goal was also to allow for a “minimal data” approach by allowing to filter records, instruments and variables in the export to only download data needed. I think this approach is desirable for handling sensitive, clinical data. Please refer to <a href="https://redcap-tools.github.io/" class="external-link">REDCap-Tools</a> for other great tools for working with REDCap in R.</p> <p>I started working on this project as the castellated longitudinal data set was a little challenging. Later, I have come to learn of the <a href="https://github.com/vubiostat/redcapAPI" class="external-link"><code>redcapAPI</code></a> package, which would also cover this functionality. I find the <code>redcapAPI</code>package quite advanced and a little difficult to work with. This have led to the continued work on this package, as an easy-to-use approach for data migration, data base creation and data handling. This package is very much to be seen as an attempt at a R-to-REDCap-to-R foundry for handling both the transition from dataset/variable list to database and the other way, from REDCap database to a tidy dataset. The goal was also to allow for a “minimal data” approach by allowing to filter records, instruments and variables in the export to only download data needed. I think this approach is desirable for handling sensitive, clinical data. Please refer to <a href="https://redcap-tools.github.io/" class="external-link">REDCap-Tools</a> for other great tools for working with REDCap in R.</p>
<p>For any more advanced uses, consider using the <code>redcapAPI</code> package.</p>
<div class="section level2"> <div class="section level2">
<h2 id="use-and-immprovements">Use and immprovements<a class="anchor" aria-label="anchor" href="#use-and-immprovements"></a> <h2 id="use-and-immprovements">Use and immprovements<a class="anchor" aria-label="anchor" href="#use-and-immprovements"></a>
</h2> </h2>
@ -175,13 +176,11 @@
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<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -53,16 +53,17 @@
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<div class="section level2"> <div class="section level2">
<h2 class="pkg-version" data-toc-text="24.4.1" id="redcapcast-2441---in-development">REDCapCAST 24.4.1 - in development<a class="anchor" aria-label="anchor" href="#redcapcast-2441---in-development"></a></h2> <h2 class="pkg-version" data-toc-text="24.5.1" id="redcapcast-2451">REDCapCAST 24.5.1<a class="anchor" aria-label="anchor" href="#redcapcast-2451"></a></h2>
<div class="section level4"> <div class="section level4">
<h4 id="functions-24-4-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-4-1"></a></h4> <h4 id="functions-24-5-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-5-1"></a></h4>
<ul><li><p>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: field names testing allows to include “[form_name]_complete” fields.</p></li> <ul><li><p>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: field names testing allows to include “[form_name]_complete” fields.</p></li>
<li><p>Fix: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: default record ID name is now “record_id”, the REDCap default. Default is still to use the first column name. Support was added to interpret column name prefix or suffix as instrument names. See the examples.</p></li> <li><p>Fix: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: default record ID name is now “record_id”, the REDCap default. Default is still to use the first column name. Support was added to interpret column name prefix or suffix as instrument names. See the examples.</p></li>
<li><p>New: <code><a href="../reference/create_instrument_meta.html">create_instrument_meta()</a></code>: creates zip with instrument files to allow adding new instruments to project in production. Takes data dictionary as input and creates a zip for each instrument specified by the <code>form_name</code> column.</p></li> <li><p>New: <code><a href="../reference/create_instrument_meta.html">create_instrument_meta()</a></code>: creates zip with instrument files to allow adding new instruments to project in production. Takes data dictionary as input and creates a zip for each instrument specified by the <code>form_name</code> column.</p></li>
<li><p>New: <code><a href="../reference/doc2dd.html">doc2dd()</a></code>: function to convert document table to data dictionary. This allows to specify instrument or whole data dictionary in text document, which for most is easier to work with and easily modifiable. The generic case is a data frame with variable names as values in a column. This is a format like the REDCap data dictionary, but gives a few options for formatting. Has a few related functions for data handling and formatting. One interesting function is <code><a href="../reference/case_match_regex_list.html">case_match_regex_list()</a></code>, which allows for a dynamic <code><a href="https://dplyr.tidyverse.org/reference/case_when.html" class="external-link">dplyr::case_when()</a></code>-like approach for regex-matching. I think it is neat at least.</p></li>
</ul></div> </ul></div>
<div class="section level4"> <div class="section level4">
<h4 id="documentation-and-more-24-4-1">Documentation and more<a class="anchor" aria-label="anchor" href="#documentation-and-more-24-4-1"></a></h4> <h4 id="documentation-and-more-24-5-1">Documentation and more<a class="anchor" aria-label="anchor" href="#documentation-and-more-24-5-1"></a></h4>
<ul><li>Dependencies: In order to deploy <code><a href="../reference/shiny_cast.html">shiny_cast()</a></code> with <code>shinylive</code>, I need to remove <code>curl</code> as a dependency. To accomplish this, the <code>shiny_deploy()</code> helper functions has been moved to the package <a href="https://github.com/agdamsbo/package.aid" class="external-link"><code>pacakge.aid</code></a>. This is for a rainy day: <a href="https://r-wasm.github.io/rwasm/" class="external-link uri">https://r-wasm.github.io/rwasm/</a>. The whole shiny part may be migrated to its own project to try to separate things and be easy on dependencies. Time will tell.</li> <ul><li>Dependencies: In order to deploy <code><a href="../reference/shiny_cast.html">shiny_cast()</a></code> with <code>shinylive</code>, I need to remove <code>curl</code> as a dependency. To accomplish this, the <code>shiny_deploy()</code> helper functions has been moved to the package <a href="https://github.com/agdamsbo/package.aid" class="external-link"><code>pacakge.aid</code></a>. This was before realising that <code>REDCapR</code> has <code>curl</code> as dependency, which is the culprit. <code>REDCapCAST</code> is not going to be a <code>shinylive</code> web-app without removing <code>REDCapR</code> dependency, which in the app is used for easy data upload and data dictionary deployment.</li>
</ul></div> </ul></div>
</div> </div>
<div class="section level2"> <div class="section level2">
@ -158,11 +159,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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8
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@ -30,10 +30,10 @@
/* Clipboard --------------------------*/ /* Clipboard --------------------------*/
function changeTooltipMessage(element, msg) { function changeTooltipMessage(element, msg) {
var tooltipOriginalTitle=element.getAttribute('data-original-title'); var tooltipOriginalTitle=element.getAttribute('data-bs-original-title');
element.setAttribute('data-original-title', msg); element.setAttribute('data-bs-original-title', msg);
$(element).tooltip('show'); $(element).tooltip('show');
element.setAttribute('data-original-title', tooltipOriginalTitle); element.setAttribute('data-bs-original-title', tooltipOriginalTitle);
} }
if(ClipboardJS.isSupported()) { if(ClipboardJS.isSupported()) {
@ -60,7 +60,7 @@
e.clearSelection(); e.clearSelection();
}); });
clipboard.on('error', function() { clipboard.on('error', function(e) {
changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy'); changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy');
}); });

4
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@ -1,11 +1,11 @@
pandoc: 3.1.11 pandoc: 3.1.11
pkgdown: 2.0.8 pkgdown: 2.0.9
pkgdown_sha: ~ pkgdown_sha: ~
articles: articles:
Database-creation: Database-creation.html Database-creation: Database-creation.html
Introduction: Introduction.html Introduction: Introduction.html
Shiny-app: Shiny-app.html Shiny-app: Shiny-app.html
last_built: 2024-04-12T12:48Z last_built: 2024-05-23T09:55Z
urls: urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference reference: https://agdamsbo.github.io/REDCapCAST/reference
article: https://agdamsbo.github.io/REDCapCAST/articles article: https://agdamsbo.github.io/REDCapCAST/articles

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@ -1,7 +1,7 @@
<!DOCTYPE html> <!DOCTYPE html>
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and child tables for each repeating instrument. Metadata and child tables for each repeating instrument. Metadata
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is used to determine which fields should be included in each resultant table."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> is used to determine which fields should be included in each resultant table."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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@ -14,7 +14,7 @@ is used to determine which fields should be included in each resultant table."><
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@ -180,11 +180,11 @@ instruments only or for all forms.</p></dd>
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validation generation from name vector. Like case_when, the matches are in
order of priority.
Primarily used in REDCapCAST to do data type coding from systematic variable
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>case_match_regex_list.Rd</code></div>
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<div class="ref-description section level2">
<p>Mimics case_when for list of regex patterns and values. Used for date/time
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Primarily used in REDCapCAST to do data type coding from systematic variable
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">case_match_regex_list</span><span class="op">(</span><span class="va">data</span>, <span class="va">match.list</span>, .default <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>vector</p></dd>
<dt>match.list</dt>
<dd><p>list of case matches</p></dd>
<dt>.default</dt>
<dd><p>Default value for non-matches. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">case_match_regex_list</span><span class="op">(</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"test_date"</span>, <span class="st">"test_time"</span>, <span class="st">"test_tida"</span>, <span class="st">"test_tid"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>date_dmy <span class="op">=</span> <span class="st">"_dat[eo]$"</span>, time_hh_mm_ss <span class="op">=</span> <span class="st">"_ti[md]e?$"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "date_dmy" "time_hh_mm_ss" NA "time_hh_mm_ss"</span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2choice.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Simple function to generate REDCap choices from character vector</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">char2choice</span><span class="op">(</span><span class="va">data</span>, char.split <span class="op">=</span> <span class="st">"/"</span>, raw <span class="op">=</span> <span class="cn">NULL</span>, .default <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>vector</p></dd>
<dt>char.split</dt>
<dd><p>splitting character(s)</p></dd>
<dt>raw</dt>
<dd><p>specific values. Can be used for options of same length.</p></dd>
<dt>.default</dt>
<dd><p>default value for missing. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">char2choice</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"yes/no"</span>,<span class="st">" yep. / nope "</span>,<span class="st">""</span>,<span class="cn">NA</span>,<span class="st">"what"</span><span class="op">)</span>,.default<span class="op">=</span><span class="cn">NA</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "1, yes | 2, no" "1, yep. | 2, nope" NA </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] NA "1, what" </span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2cond.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Simple function to generate REDCap branching logic from character vector</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">char2cond</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> minor.split <span class="op">=</span> <span class="st">","</span>,</span>
<span> major.split <span class="op">=</span> <span class="st">";"</span>,</span>
<span> major.sep <span class="op">=</span> <span class="st">" or "</span>,</span>
<span> .default <span class="op">=</span> <span class="cn">NA</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>vector</p></dd>
<dt>minor.split</dt>
<dd><p>minor split</p></dd>
<dt>major.split</dt>
<dd><p>major split</p></dd>
<dt>major.sep</dt>
<dd><p>argument separation. Default is " or ".</p></dd>
<dt>.default</dt>
<dd><p>default value for missing. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
</div>
<div class="section level2">
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co">#data &lt;- dd_inst$betingelse</span></span></span>
<span class="r-in"><span><span class="co">#c("Extubation_novent, 2; Pacu_delay, 1") |&gt; char2cond()</span></span></span>
<span class="r-in"></span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>create_html_table.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Create two-column HTML table for data piping in REDCap instruments</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">create_html_table</span><span class="op">(</span><span class="va">text</span>, <span class="va">variable</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>text</dt>
<dd><p>descriptive text</p></dd>
<dt>variable</dt>
<dd><p>variable to pipe</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">create_html_table</span><span class="op">(</span>text <span class="op">=</span> <span class="st">"Patient ID"</span>, variable <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"[cpr]"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;table style="border-collapse: collapse; width: 100%;" border="0"&gt; &lt;tbody&gt;&lt;tr&gt; &lt;td style="width: 58%;"&gt; &lt;h5&gt;&lt;span style="font-weight: normal;"&gt;Patient ID&lt;br /&gt;&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;td style="width: 42%; text-align: left;"&gt; &lt;h5&gt;&lt;span style="font-weight: bold;"&gt;[cpr]&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;/tr&gt;&lt;/tbody&gt; &lt;/table&gt;</span>
<span class="r-in"><span><span class="fu">create_html_table</span><span class="op">(</span>text <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste</a></span><span class="op">(</span><span class="st">"assessor"</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">2</span>, sep <span class="op">=</span> <span class="st">"_"</span><span class="op">)</span>, variable <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"[cpr]"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;table style="border-collapse: collapse; width: 100%;" border="0"&gt; &lt;tbody&gt;&lt;tr&gt; &lt;td style="width: 58%;"&gt; &lt;h5&gt;&lt;span style="font-weight: normal;"&gt;assessor_1&lt;br /&gt;&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;td style="width: 42%; text-align: left;"&gt; &lt;h5&gt;&lt;span style="font-weight: bold;"&gt;[cpr]&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;/tr&gt;&lt;tr&gt; &lt;td style="width: 58%;"&gt; &lt;h5&gt;&lt;span style="font-weight: normal;"&gt;assessor_2&lt;br /&gt;&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;td style="width: 42%; text-align: left;"&gt; &lt;h5&gt;&lt;span style="font-weight: bold;"&gt;[cpr]&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;/tr&gt;&lt;/tbody&gt; &lt;/table&gt;</span>
<span class="r-in"><span><span class="co"># create_html_table(text = c("CPR nummer","Word"), variable = c("[cpr][1]", "[cpr][2]", "[test]"))</span></span></span>
</code></pre></div>
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reference/create_instrument_meta.html
View File

@ -1,7 +1,7 @@
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initial design phase. If you want to later add new instruments, this can be initial design phase. If you want to later add new instruments, this can be
used to add instrument(s) to a project in production."><title>Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script 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initial design phase. If you want to later add new instruments, this can be initial design phase. If you want to later add new instruments, this can be
used to add instrument(s) to a project in production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> used to add instrument(s) to a project in production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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@ -14,7 +14,7 @@ used to add instrument(s) to a project in production."><meta property="og:image"
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@ -117,11 +117,11 @@ Default is TRUE.</p></dd>
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8
reference/d2w.html
View File

@ -1,5 +1,5 @@
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<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>doc2dd.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Works well with `project.aid::docx2list()`.
Allows defining a database in a text document (see provided template) for
an easier to use data base creation. This approach allows easier
collaboration when defining the database. The generic case is a data frame
with variable names as values in a column. This is a format like the REDCap
data dictionary, but gives a few options for formatting.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">doc2dd</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> <span class="va">instrument.name</span>,</span>
<span> col.variables <span class="op">=</span> <span class="fl">1</span>,</span>
<span> list.datetime.format <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>date_dmy <span class="op">=</span> <span class="st">"_dat[eo]$"</span>, time_hh_mm_ss <span class="op">=</span> <span class="st">"_ti[md]e?$"</span><span class="op">)</span>,</span>
<span> col.description <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> col.condition <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> col.subheader <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> subheader.tag <span class="op">=</span> <span class="st">"h2"</span>,</span>
<span> condition.minor.sep <span class="op">=</span> <span class="st">","</span>,</span>
<span> condition.major.sep <span class="op">=</span> <span class="st">";"</span>,</span>
<span> col.calculation <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> col.choices <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> choices.char.sep <span class="op">=</span> <span class="st">"/"</span>,</span>
<span> missing.default <span class="op">=</span> <span class="cn">NA</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>tibble or data.frame with all variable names in one column</p></dd>
<dt>instrument.name</dt>
<dd><p>character vector length one. Instrument name.</p></dd>
<dt>col.variables</dt>
<dd><p>variable names column (default = 1), allows dplyr
subsetting</p></dd>
<dt>list.datetime.format</dt>
<dd><p>formatting for date/time detection.
See `case_match_regex_list()`</p></dd>
<dt>col.description</dt>
<dd><p>descriptions column, allows dplyr
subsetting. If empty, variable names will be used.</p></dd>
<dt>col.condition</dt>
<dd><p>conditions for branching column, allows dplyr
subsetting. See `char2cond()`.</p></dd>
<dt>col.subheader</dt>
<dd><p>sub-header column, allows dplyr subsetting.
See `format_subheader()`.</p></dd>
<dt>subheader.tag</dt>
<dd><p>formatting tag. Default is "h2"</p></dd>
<dt>condition.minor.sep</dt>
<dd><p>condition split minor. See `char2cond()`.
Default is ",".</p></dd>
<dt>condition.major.sep</dt>
<dd><p>condition split major. See `char2cond()`.
Default is ";".</p></dd>
<dt>col.calculation</dt>
<dd><p>calculations column. Has to be written exact.
Character vector.</p></dd>
<dt>col.choices</dt>
<dd><p>choices column. See `char2choice()`.</p></dd>
<dt>choices.char.sep</dt>
<dd><p>choices split. See `char2choice()`. Default is "/".</p></dd>
<dt>missing.default</dt>
<dd><p>value for missing fields. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>tibble or data.frame (same as data)</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># data &lt;- dd_inst</span></span></span>
<span class="r-in"><span><span class="co"># data |&gt; doc2dd(instrument.name = "evt",</span></span></span>
<span class="r-in"><span><span class="co"># col.description = 3,</span></span></span>
<span class="r-in"><span><span class="co"># col.condition = 4,</span></span></span>
<span class="r-in"><span><span class="co"># col.subheader = 2,</span></span></span>
<span class="r-in"><span><span class="co"># col.calculation = 5,</span></span></span>
<span class="r-in"><span><span class="co"># col.choices = 6)</span></span></span>
<span class="r-in"></span>
</code></pre></div>
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@ -419,11 +419,11 @@ Please, do always inspect the data dictionary before upload.</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -93,11 +93,11 @@
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reference/file_extension.html
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -49,7 +49,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1> <img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>file_extension.Rd</code></div> <div class="d-none name"><code>file_extension.Rd</code></div>
</div> </div>
@ -88,11 +88,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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reference/focused_metadata.html
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<img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>format_subheader.Rd</code></div>
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<div class="ref-description section level2">
<p>Sub-header formatting wrapper</p>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">format_subheader</span><span class="op">(</span><span class="va">data</span>, tag <span class="op">=</span> <span class="st">"h2"</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>character vector</p></dd>
<dt>tag</dt>
<dd><p>character vector length 1</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
</div>
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"Instrument header"</span> <span class="op">|&gt;</span> <span class="fu">format_subheader</span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="rich-text-field-label"&gt;&lt;h2&gt;Instrument header&lt;/h2&gt;&lt;/div&gt;</span>
</code></pre></div>
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8
reference/get_id_name.html
View File

@ -1,5 +1,5 @@
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<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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8
reference/guess_time_only_filter.html
View File

@ -2,7 +2,7 @@
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content='This is just a try at guessing data type based on data class and column names <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content='This is just a try at guessing data type based on data class and column names
hoping for a tiny bit of naming consistency. R does not include a time-only hoping for a tiny bit of naming consistency. R does not include a time-only
data format natively, so the "hms" class from `readr` is used. This data format natively, so the "hms" class from `readr` is used. This
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<img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>html_tag_wrap.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Simple html tag wrapping for REDCap text formatting</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">html_tag_wrap</span><span class="op">(</span><span class="va">data</span>, tag <span class="op">=</span> <span class="st">"h2"</span>, extra <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>character vector</p></dd>
<dt>tag</dt>
<dd><p>character vector length 1</p></dd>
<dt>extra</dt>
<dd><p>character vector</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">html_tag_wrap</span><span class="op">(</span><span class="st">"Titel"</span>, tag <span class="op">=</span> <span class="st">"div"</span>, extra <span class="op">=</span> <span class="st">'class="rich-text-field-label"'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="rich-text-field-label"&gt;Titel&lt;/div&gt;</span>
<span class="r-in"><span><span class="fu">html_tag_wrap</span><span class="op">(</span><span class="st">"Titel"</span>, tag <span class="op">=</span> <span class="st">"h2"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;h2&gt;Titel&lt;/h2&gt;</span>
</code></pre></div>
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -69,11 +69,31 @@
<dd>Split REDCap repeating instruments table into multiple tables</dd> <dd>Split REDCap repeating instruments table into multiple tables</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="case_match_regex_list.html">case_match_regex_list()</a></code>
</dt>
<dd>List-base regex case_when</dd>
</dl><dl><dt>
<code><a href="char2choice.html">char2choice()</a></code>
</dt>
<dd>Simple function to generate REDCap choices from character vector</dd>
</dl><dl><dt>
<code><a href="char2cond.html">char2cond()</a></code>
</dt>
<dd>Simple function to generate REDCap branching logic from character vector</dd>
</dl><dl><dt>
<code><a href="clean_redcap_name.html">clean_redcap_name()</a></code> <code><a href="clean_redcap_name.html">clean_redcap_name()</a></code>
</dt> </dt>
<dd>clean_redcap_name</dd> <dd>clean_redcap_name</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="create_html_table.html">create_html_table()</a></code>
</dt>
<dd>Create two-column HTML table for data piping in REDCap instruments</dd>
</dl><dl><dt>
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code> <code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
</dt> </dt>
<dd>Create zips file with necessary content based on data set</dd> <dd>Create zips file with necessary content based on data set</dd>
@ -84,6 +104,11 @@
<dd>Convert single digits to words</dd> <dd>Convert single digits to words</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="doc2dd.html">doc2dd()</a></code>
</dt>
<dd>Doc table to data dictionary - EARLY, DOCS MISSING</dd>
</dl><dl><dt>
<code><a href="ds2dd.html">ds2dd()</a></code> <code><a href="ds2dd.html">ds2dd()</a></code>
</dt> </dt>
<dd>(DEPRECATED) Data set to data dictionary function</dd> <dd>(DEPRECATED) Data set to data dictionary function</dd>
@ -109,6 +134,11 @@
<dd>focused_metadata</dd> <dd>focused_metadata</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="format_subheader.html">format_subheader()</a></code>
</dt>
<dd>Sub-header formatting wrapper</dd>
</dl><dl><dt>
<code><a href="get_api_key.html">get_api_key()</a></code> <code><a href="get_api_key.html">get_api_key()</a></code>
</dt> </dt>
<dd>Retrieve project API key if stored, if not, set and retrieve</dd> <dd>Retrieve project API key if stored, if not, set and retrieve</dd>
@ -129,6 +159,16 @@
<dd>Change "hms" to "character" for REDCap upload.</dd> <dd>Change "hms" to "character" for REDCap upload.</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="html_tag_wrap.html">html_tag_wrap()</a></code>
</dt>
<dd>Simple html tag wrapping for REDCap text formatting</dd>
</dl><dl><dt>
<code><a href="is_missing.html">is_missing()</a></code>
</dt>
<dd>Multi missing check</dd>
</dl><dl><dt>
<code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code> <code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code>
</dt> </dt>
<dd>Test if repeatable or longitudinal</dd> <dd>Test if repeatable or longitudinal</dd>
@ -149,6 +189,31 @@
<dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd> <dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="process_user_input.html">process_user_input()</a></code>
</dt>
<dd>User input processing</dd>
</dl><dl><dt>
<code><a href="process_user_input.character.html">process_user_input(<i>&lt;character&gt;</i>)</a></code>
</dt>
<dd>User input processing character</dd>
</dl><dl><dt>
<code><a href="process_user_input.data.frame.html">process_user_input(<i>&lt;data.frame&gt;</i>)</a></code>
</dt>
<dd>User input processing data.frame</dd>
</dl><dl><dt>
<code><a href="process_user_input.default.html">process_user_input(<i>&lt;default&gt;</i>)</a></code>
</dt>
<dd>User input processing default</dd>
</dl><dl><dt>
<code><a href="process_user_input.response.html">process_user_input(<i>&lt;response&gt;</i>)</a></code>
</dt>
<dd>User input processing response</dd>
</dl><dl><dt>
<code><a href="read_input.html">read_input()</a></code> <code><a href="read_input.html">read_input()</a></code>
</dt> </dt>
<dd>Flexible file import based on extension</dd> <dd>Flexible file import based on extension</dd>
@ -217,11 +282,11 @@
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>is_missing.Rd</code></div>
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<div class="ref-description section level2">
<p>Multi missing check</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">is_missing</span><span class="op">(</span><span class="va">data</span>, nas <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">""</span>, <span class="st">"NA"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>character vector</p></dd>
<dt>nas</dt>
<dd><p>character vector of strings considered as NA</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>logical vector</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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@ -98,11 +98,11 @@ and "redcap_repeat_instance"</p></dd>
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reference/match_fields_to_form.html
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reference/mtcars_redcap.html
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<img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.character.Rd</code></div>
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<div class="ref-description section level2">
<p>User input processing character</p>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for character</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.data.frame.Rd</code></div>
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<div class="ref-description section level2">
<p>User input processing data.frame</p>
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<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for data.frame</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.default.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>User input processing default</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for default</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
</div>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.Rd</code></div>
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<p>User input processing</p>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">process_user_input</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
</dl></div>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.response.Rd</code></div>
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<div class="ref-description section level2">
<p>User input processing response</p>
</div>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for response</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1> <img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>read_input.Rd</code></div> <div class="d-none name"><code>read_input.Rd</code></div>
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@ -12,7 +12,7 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
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@ -111,11 +111,11 @@ Numeric vector.</p></dd>
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reference/read_redcap_tables.html
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@ -3,7 +3,7 @@
REDCapR::redcap_read and only downloading specified fields, forms and/or REDCapR::redcap_read and only downloading specified fields, forms and/or
events using the built-in focused_metadata including some clean-up. events using the built-in focused_metadata including some clean-up.
Works with classical and longitudinal projects with or without repeating Works with classical and longitudinal projects with or without repeating
instruments."><title>Download REDCap data — read_redcap_tables • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" 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REDCapR::redcap_read and only downloading specified fields, forms and/or REDCapR::redcap_read and only downloading specified fields, forms and/or
events using the built-in focused_metadata including some clean-up. events using the built-in focused_metadata including some clean-up.
Works with classical and longitudinal projects with or without repeating Works with classical and longitudinal projects with or without repeating
@ -18,7 +18,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
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@ -136,11 +136,11 @@ all.</p></dd>
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reference/redcap_wider.html
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@ -1,6 +1,6 @@
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Converts a list of REDCap data frames from long to wide format. <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Converts a list of REDCap data frames from long to wide format.
Handles longitudinal projects, but not yet repeated instruments."><title>Redcap Wider — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Redcap Wider — redcap_wider"><meta property="og:description" content="Converts a list of REDCap data frames from long to wide format. 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@ -174,11 +174,11 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
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reference/redcapcast_data.html
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@ -1,6 +1,6 @@
<!DOCTYPE html> <!DOCTYPE html>
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@ -12,7 +12,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
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@ -148,11 +148,11 @@ Contains only synthetic data.</p>
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reference/redcapcast_meta.html
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reference/sanitize_split.html
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@ -127,11 +127,11 @@ be included in each form</p></dd>
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8
reference/strsplitx.html
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@ -1,6 +1,6 @@
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@ -118,11 +118,11 @@ easing the split around the defined delimiter, see example.</p>
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8
reference/time_only_correction.html
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@ -1,5 +1,5 @@
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -90,11 +90,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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8
reference/ui_factory.html
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@ -1,5 +1,5 @@
<!DOCTYPE html> <!DOCTYPE html>
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<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small> <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -74,11 +74,11 @@
<footer><div class="pkgdown-footer-left"> <footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p> <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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2
search.json
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39
sitemap.xml
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@ -33,15 +33,30 @@
<url> <url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html</loc> <loc>https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html</loc>
</url> </url>
<url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html</loc>
</url>
<url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html</loc>
</url>
<url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html</loc>
</url>
<url> <url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html</loc> <loc>https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html</loc>
</url> </url>
<url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html</loc>
</url>
<url> <url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html</loc> <loc>https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html</loc>
</url> </url>
<url> <url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/d2w.html</loc> <loc>https://agdamsbo.github.io/REDCapCAST/reference/d2w.html</loc>
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