mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-10-30 11:31:52 +01:00
62 lines
1.6 KiB
R
62 lines
1.6 KiB
R
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# Installing the latest REDCapRITS from GitHub ------------------------------
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#devtools::install_github("SpectrumHealthResearch/REDCapRITS/R@s3methods")
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devtools::install_github("SpectrumHealthResearch/REDCapRITS/R@longitudinal-data")
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# Debugging reading in longitudinal datasets ------------------------------
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# Reading in the files
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file_paths <- file.path(
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"../test-data/test_splitr/",
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c(
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records = "WARRIORtestForSoftwa_DATA_2018-06-21_1431.csv",
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metadata = "WARRIORtestForSoftwareUpgrades_DataDictionary_2018-06-21.csv"
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)
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)
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redcap <- lapply(file_paths, read.csv, stringsAsFactors = FALSE)
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names(redcap) <- c("records", "metadata")
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str(redcap)
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# A bunch of blank rows
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redcap[["metadata"]] <- redcap[["metadata"]][as.logical(nchar(redcap[["metadata"]][,1])),]
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str(redcap, 1)
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setdiff(redcap[["metadata"]][,1], names(redcap[["records"]]))
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# Viewing the files
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View(redcap[["records"]])
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View(redcap[["metadata"]])
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# Playing with the names --------------------------------------------------
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vars_in_data <- names(redcap$records)
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universal_fields <- c(
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vars_in_data[1],
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grep("^redcap_(?!(repeat)).*", vars_in_data, value = TRUE, perl = TRUE)
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)
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repeat_instrument_fields <- grep("^redcap_repeat.*", vars_in_data, value = TRUE)
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# Give it a shot ----------------------------------------------------------
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testCheck <- with(redcap, REDCap_split(records, metadata))
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lapply(testCheck, names)
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commonFields <- Reduce(intersect, lapply(testCheck, names))
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commonFields
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library(dplyr)
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lapply(testCheck, glimpse) %>% invisible
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testCheck[[1]] %>%
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left_join(testCheck$informed_consent, by = commonFields) %>%
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glimpse
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